ga4gh
There are 3 repositories under ga4gh topic.
- cromwell
broadinstitute / cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Language:Scala 963 ga4gh / benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Language:HTML 181ohsu-comp-bio / funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
Language:Go 117Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Language:Python 96The WES API is a standard way to run and manage portable workflows.
- phenopacket-schema
phenopackets / phenopacket-schema
Repository for the GA4GH phenopacket schema
Language:Java 69 - Language:Python 46
elixir-cloud-aai / TESK
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
Language:Python 39APIs for discovering genomics tools, their metadata and their containers
Language:Shell 30Trigger CWL workflows via GA4GH WES and TES
Language:Python 15EGA-archive / crypt4gh
GA4GH cryptographic tools
Language:Python 14An app and library for building, conversion, and validation of GA4GH Phenopackets.
Language:Java 10BD2KGenomics / bioapi-examples
Code examples for working with web based bioinformatics APIs
Language:Jupyter Notebook 9Interoperable execution of workflows using GA4GH APIs
Language:Python 9- Language:Jupyter Notebook 9
CSCfi / beacon-python
Python-based GA4GH Beacon API Server
Language:Python 8GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
Language:Java 7ga4gh-beacon / ga4gh-beacon.github.io
Website of ELIXIR Beacon - A GA4GH Driver Project
Language:HTML 7Repository for the Google Summer of Code for the Reference Retrieval API
Language:Python 7neicnordic / crypt4gh
Crypt4GH standard implementation
Language:Go 6- Language:Python 5
Rust implementation for the Crypt4GH encryption format
Language:Rust 5Proxy service for injecting middleware into GA4GH TES requests
Language:Python 5GA4GH Web components are the reusable custom elements that can be utilized in your web apps & web pages independently irrespective of what framework/library you are using to build the frontend.
Language:TypeScript 5andrewyatz / refget-server-python
An implementation of the Refget v2.0.0 standard using Python
Language:Python 4CNAG-Biomedical-Informatics / pheno-ranker
Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.
Language:Perl 4Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas
Language:Python 4Barski-lab / ga4gh_challenge
Workflow for GA4GH/DREAM challenge (phase 2)
Language:Common Workflow Language 3BioContainers / biocontainers-backend
Python backend for Biocontainers (Flask + MongoDB)
Language:Python 3Proxy service for injecting middleware into GA4GH WES requests
Language:Python 3ga4gh-metadata / metadata-schemas
Schema definitions for the Global Alliance for Genomics and Health non-sequence objects
Schedule the processing of ENA sequences and upload to S3 public dataset
Language:Python 2ndopj / tesp-api
An Open-source implementation of a task execution engine based on the TES standard distributing executions to services exposing Pulsar application.
Language:Python 2
