ga4gh
There are 3 repositories under ga4gh topic.
- cromwell
broadinstitute / cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Language:Scala 1006 ga4gh / benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Language:HTML 193ohsu-comp-bio / funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
Language:Go 122Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Language:Python 96The WES API is a standard way to run and manage portable workflows.
- phenopacket-schema
phenopackets / phenopacket-schema
Repository for the GA4GH phenopacket schema
Language:Java 79 - Language:Python 52
elixir-cloud-aai / TESK
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
Language:Python 40APIs for discovering genomics tools, their metadata and their containers
Language:Shell 30EGA-archive / crypt4gh
GA4GH cryptographic tools
Language:Python 18monarch-initiative / phenopacket-store
Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
Language:Jupyter Notebook 17Trigger CWL workflows via GA4GH WES and TES
Language:Python 16An app and library for building, conversion, and validation of GA4GH Phenopackets.
Language:Java 13BD2KGenomics / bioapi-examples
Code examples for working with web based bioinformatics APIs
Language:Jupyter Notebook 9Interoperable execution of workflows using GA4GH APIs
Language:Python 9CSCfi / beacon-python
Python-based GA4GH Beacon API Server
Language:Python 8Proxy service for injecting middleware into GA4GH TES requests
Language:Python 8neicnordic / crypt4gh
Crypt4GH standard implementation
Language:Go 8GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
Language:Java 7ga4gh-beacon / ga4gh-beacon-legacy-website
Website of ELIXIR Beacon - A GA4GH Driver Project
Language:HTML 7Repository for the Google Summer of Code for the Reference Retrieval API
Language:Python 7GA4GH Web components are the reusable custom elements that can be utilized in your web apps & web pages independently irrespective of what framework/library you are using to build the frontend.
Language:TypeScript 6- Language:Python 5
Rust implementation for the Crypt4GH encryption format
Language:Rust 5andrewyatz / refget-server-python
An implementation of the Refget v2.0.0 standard using Python
Language:Python 4CNAG-Biomedical-Informatics / pheno-ranker
Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2.
Language:Perl 4ga4gh-metadata / metadata-schemas
Schema definitions for the Global Alliance for Genomics and Health non-sequence objects
Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas
Language:Python 4stjude-rust-labs / tes
A crate for working with the Task Execution Service (TES) specification.
Language:Rust 4Barski-lab / ga4gh_challenge
Workflow for GA4GH/DREAM challenge (phase 2)
Language:Common Workflow Language 3BioContainers / biocontainers-backend
Python backend for Biocontainers (Flask + MongoDB)
Language:Python 3Proxy service for injecting middleware into GA4GH WES requests
Language:Python 3Documentation for the ELIXIR::GA4GH Cloud
Language:HTML 2