analysis-pipeline

There are 2 repositories under analysis-pipeline topic.

seandavi / awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
rna-seq-data gene-expression scrna-seq-data bioinformatics awesome-list dimensionality-reduction cell-cycle atac-seq analysis cell-differentiation python clustering cell-populations gene-expression-profiles rna-seq-experiments cell-clusters analysis-pipeline data-integration data-visualization single-cell
2901
grailbio / reflow
A language and runtime for distributed, incremental data processing in the cloud
bioinformatics-pipeline scientific-computing language runtime data-science cloud-computing aws analysis-pipeline golang
Language:Go 952
tonyfischetti / assertr
Assertive programming for R analysis pipelines
analysis-pipeline assertion-library assertion-methods assertions peer-reviewed predicate-functions r r-package rstats
Language:R 463
cdeldon / thermography
Automatic detection of defected solar panel modules
image-processing detection analysis-pipeline image-classification
Language:Python 107
AllenInstitute / ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
electrophysiology analysis-pipeline spikes python3
Language:Python 97
PRISM
1313e / PRISM
An alternative to MCMC for rapid analysis of models
model analysis-pipeline model-analysis emulator regression python3 python
Language:Python 42
genepi / cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
cloudgene hadoop docker analysis-pipeline cloudgene-saas
Language:Java 35
Mu-Sigma / analysis-pipelines
Enables data scientists to compose pipelines of analysis which consist of data manipulation, exploratory analysis & reporting, as well as modeling steps. Data scientists can use tools of their choice through an R interface, and compose interoperable pipelines between R, Spark, and Python.
analysis-pipeline interoperable-pipelines spark python r
Language:R 27
enormandeau / barque
Environmental DNA metabarcoding taxonomic identification
environmental-dna metabarcoding analysis-pipeline genomics
Language:Python 26
USDA-VS / vSNP
vSNP -- validate SNPs
snp pipeline genomics tuberculosis brucella analysis-pipeline mycobacterium-tuberculosis-complex snps whole-genome-sequencing high high-throughput-sequencing bam-files vcf phylogenetics freebayes wgs
Language:Python 18
sdss / mangadap
The MaNGA Data Analysis Pipeline
analysis-pipeline astronomy spectroscopy
Language:Python 15
ahujaraman / spark_kafka_tweet_analysis
What people are tweeting about now, in your desired location? Live Streaming of Twitter Data to Spark and Tweet Analysis application on various trends Eg: Trending HashTags, Trending Mentions etc. Location based features supported.
spark-streaming spark-sql spark pyspark twitter analysis-pipeline beginner-project
Language:Python 7
BlipFinder
mkongsore / BlipFinder
Analysis pipeline capable of searching for dark compact objects in the Milky Way through astrometric lensing in real or mock Gaia DR4 data.
analysis-pipeline black-holes dark-matter gaia gravitational-lensing physics astronomy astroparticle-physics astrophysics milky-way mock-data-generator particle-physics phenomenology dark-matter-halos neutron-stars primordial-black-holes high-energy-physics astrometry telescope
Language:Jupyter Notebook 7
WormLabCaltech / alaska
Automated and friendly RNA-seq analysis (deprecated)
rna-seq automation pipeline alaska analysis analysis-pipeline portal quality-control sleuth kallisto python docker
Language:Python 6
abhijeetsingh1704 / AcetoScan
AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
fthfs amplicon-sequencing analysis-pipeline acetogens acetobase
Language:Shell 4
CTLife / PipiDABS
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
dna-methylation r bs-seq analysis-pipeline downstream-figures
Language:R 4
ynikitenko / lena
Lena is an architectural framework for data analysis
analysis-framework analysis-pipeline data-analysis data-science
Language:Python 4
JetBrains-Research / bitcode-tools
Gradle tools to analyze bitcode of a Kotlin/Native project
analysis-pipeline bitcode bitcode-generation gradle gradle-kotlin-dsl gradle-plugin kotlin-native kotlin-native-plugin
Language:Kotlin 3
weng-lab / krews
KREWS Scientific Data Pipeline Framework
kotlin workflows analysis-pipeline
Language:Kotlin 3
FOGSEC / snake
snake - a malware storage zoo
malware-analysis malware malware-samples malware-development malware-research zoo storage malwareanalysis analysis analysis-pipeline
Language:Shell 2
jobs-data-analyzer
Stack-Train / jobs-data-analyzer
An easy-to-use tool for extracting insights from jobs data.
analysis analysis-framework analysis-pipeline analysis-services data-insights data-science jobs-data jobs-pipeline jobsearch visualization flask-api flask python jira
Language:JavaScript 2
USDA-VS / vSNP3
vSNP -- validate SNPs
bam-files snps analysis-pipeline brucella freebayes genomics high-throughput-sequencing influenza mycobacterium-tuberculosis-complex phylogenetics pipeline sars-cov-2 tuberculosis vcf-files wgs whole-genome-sequencing mycobacterium-bovis mycobacterium-bovis-af2122 bwa-mem
Language:Python 2
vrrenske / spotprocessR
code used in van Raaphorst, Kjos & Veening (2017), Chromosome segregation drives division site selection in Streptococcus pneumoniae, PNAS
analysis-pipeline bacterial cell-segmentation
Language:R 2
danielmk / PatchSeq
An analysis pipeline for patch seq data, a combination of patch-clamp electrophysiology and single cell sequencing.
single-cell-rna-seq electrophysiology analysis-pipeline patchseq-data
Language:Python 1
memobc / memolab-psychophys-pipeline
Repository home of the Memo Lab's Psychophysiology Pipeline
pspm physiological analysis-pipeline
Language:MATLAB 1
peitek / eyetracking-analyses
Collection of Python scripts for various eye-tracking analyses for our fMRI studies
eye-tracking python-script analysis analysis-pipeline
Language:AGS Script 1
AgenttiX / cloc-action
GitHub action to count lines of code with CLOC
cloc analysis analysis-pipeline ci
Language:Shell
systemPipeR / SPatacseq
Workflow Template
workflow development atac-seq-pipeline analysis-pipeline systempiper systempiper-workflows
Language:TeX