spliced-alignment

There are 0 repository under spliced-alignment topic.

lh3 / minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bioinformatics genomics sequence-alignment spliced-alignment
Language:C 1698
jguhlin / minimap2-rs
Rust bindings to minimap2 library
alignment bioinformatics ffi longread minimap2 rust genomics sequence-alignment spliced-alignment
Language:Rust 51
Kuanhao-Chao / splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
alignment annotation convolutional-neural-networks deep-learning residual-networks rna-seq splice-junctions splicing spliced-alignment transcript-assembly
Language:C++ 29
PavlidisLab / rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
rna-seq alignment quantification ngs ngs-analysis illumina rsem star stringtie fastqc bioinformatics-pipeline bioinformatics gene-expression transcriptomics genomics spliced-alignment splice-aware bash
Language:Python 19
Kuanhao-Chao / splam-analysis-results
all the scripts to reproduce the results in the splam paper
benchmark rna-seq splice-junction spliced-alignment splicing
Language:Python 1
sivkri / RNASeq-Analysis-JunctionSeq-QoRTs
This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.
splice-junctions spliced-alignment splice-variants bioinformatics data-analysis differential-splicing genomics quality-control rna-seq rna-seq-analysis transcriptomics junctionseq qorts
Language:R 0