usegalaxy

There are 1 repository under usegalaxy topic.

• galaxyproject / galaxy

  Data intensive science for everyone.

  bioinformaticsworkflowgenomicssciencesequencingngsdnausegalaxypipelineworkflow-enginehacktoberfest
  Language:Python 1321
• training-material

  galaxyproject / training-material

  A collection of Galaxy-related training material

  usegalaxytrainingmaterialsngstutorialmetagenomicsproteomicsrnaseqchip-seqhacktoberfest
  Language:HTML 295

• galaxyproject / tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  hacktoberfestiuctoolstoolshedusegalaxywrappers
  Language:HTML 161

• galaxyproject / SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  covid-2019usegalaxycoronavirus2019-ncovcovid19covid
  Language:Jupyter Notebook 128

• galaxyproject / galaxy-hub

  Galaxy Community Hub

  usegalaxyhomepagedocumentationcommunityhomehubhacktoberfest
  Language:HTML 95

• galaxyproject / planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  usegalaxycommonwlsdkcliclickhacktoberfest
  Language:Python 85

• galaxyproject / bioblend

  A Python library for interacting with the Galaxy API

  usegalaxyapiapi-clientcloudmanhacktoberfest
  Language:Python 84
• admin-training

  galaxyproject / admin-training

  Galaxy Admin Training

  usegalaxyadmintrainingdevelopmenttoolshedclusternginxsupervisoransibletoolshacktoberfest
  Language:HCL 60

• galaxyproject / cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxycloudmanhacktoberfest
  Language:Python 37

• galaxyproject / tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  toolstoolshedusegalaxy
  Language:Python 37

• galaxyproject / usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  ansibleplaybookpythonusegalaxy
  Language:Shell 31

• C3BI-pasteur-fr / ngphylogeny-django

  phylogeneticsworkflowsgalaxy-projectdjangousegalaxy
  Language:HTML 27

• hexylena / argparse2tool

  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

  usegalaxypythonbioinformatics
  Language:Python 26

• workflow4metabolomics / tools-metabolomics

  Galaxy tools for metabolomics maintained by Workflow4Metabolomics

  metabolomicsgalaxygalaxy-projectworkflow4metabolomicsusegalaxymass-spectrometrynmrmetabolomics-pipelinelcmsgcms
  Language:R 24

• galaxyproject / iwc

  Galaxy Workflows maintained by the Intergalactic Workflow Commission

  hackathonusegalaxyworkflow
  Language:Python 23

• usegalaxy-eu / ena-cog-uk-wfs

  Collection of scripts for automated SARS-CoV-2 genome surveillance.

  usegalaxyanalysisgalaxysars-cov-2bioinformatics
  Language:Python 21

• usegalaxy-eu / sars-cov-2-processing-requests

  Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

  galaxyusegalaxybioinformaticssars-cov-2
  Language:Python 17

• BMCV / galaxy-image-analysis

  Galaxy tools for image analysis

  usegalaxyusegalaxy-eu
  Language:Python 14

• galaxyproject / galaxy-lib

  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

  usegalaxylibrarypython
  Language:Python 12

• RECETOX / galaxytools

  Set of Galaxy tool wrappers developed at RECETOX

  chromatographygalaxyprojecthacktoberfestmass-spectrometryusegalaxy
  Language:Python 12

• galaxy-genome-annotation / docker-galaxy-genome-annotation

  :whale: Galaxy Docker Image with Tools for Genome Annotation

  dockergalaxygenome-annotationusegalaxy
  Language:Dockerfile 11

• galaxyproject / planemo-machine

  A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.

  usegalaxyvirtualbox-ovadocker-imageplanemo-machine
  Language:HTML 10

• workflow4metabolomics / workflow4metabolomics

  Workflow4Metabolomics meta repository

  metabolomicsworkflow4metabolomicsgalaxy-projectlc-msnmrusegalaxy
  Language:HTML 10

• galaxyproject / starforge

  Build Galaxy dependencies, wheels, and other things, in Docker (and other things)

  usegalaxydependencieswheelspython
  Language:Python 8

• NordicESMhub / galaxy-tools

  Galaxy Tools maintained by NordicESMHub

  galaxyhacktoberfestnordicesmhubtoolstoolshedusegalaxywrappers
  Language:Python 8

• RECETOX / MSMetaEnhancer

  Tool for mass spectra metadata annotation.

  annotationshacktoberfestmass-spectrometrypythonusegalaxy
  Language:Python 8

• galaxyproteomics / docker-galaxyp

  :whale: Galaxy Docker repository with tools for proteomics (GalaxyP flavour)

  galaxygalaxy-dockerproteomicsusegalaxy
  Language:Dockerfile 7

• galaxy-genome-annotation / galaxy-circos-tool

  DEPRECATED: Merged into https://github.com/galaxyproject/tools-iuc/

  circosusegalaxybioinformatics
  Language:Python 6

• usegalaxy-eu / vgcn

  Virtual Galaxy Compute Nodes (vgcn)

  ansiblebioinformaticspackerusegalaxyvirtualization
  Language:Python 6

• fredericlemoine / golaxy

  golaxy : interacting with Galaxy in Go

  galaxy-projectapibioinformaticsusegalaxygolang
  Language:Go 5

• workflow4metabolomics / w4m-docker

  Docker for Workflow4Metabolomics Galaxy platform.

  galaxydockerworkflow4metabolomicsmetabolomicsgalaxy-projectusegalaxy
  Language:Dockerfile 5

• C3BI-pasteur-fr / ngphylogeny-galaxy

  Galaxy tools and workflows used in NGPhylogeny.fr

  workflowgalaxyusegalaxysingularityphylogeny
  Language:HTML 4

• galaxy-genome-annotation / galaxy-tools

  Galaxy tools for Genome Annotation

  bioinformaticsgenome-annotationusegalaxy
  Language:Python 4

• usegalaxy-eu / operations

  usegalaxy.eu operations

  documentationoperationsusegalaxyusegalaxy-eu
  4

• RECETOX / workflow-testing

  Contains RECETOX workflows with automated tests against our instance at https://umsa.cerit-sc.cz/

  galaxyprojecthacktoberfesttestingusegalaxy
  3

• kostrykin / galaxy-community-activities

  Tool which reports and summarizes activities within a Galaxy community.

  usegalaxy
  Language:Python 2