Söding Lab's repositories
MMseqs2-App
MMseqs2 app to run on your workstation or servers
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
hhdatabase_cif70
Scripts to generate the pdb70 database for hh-suite on the basis of pdb's mmcif format
MMseqs2-Regression
MMseqs2 Regression Testing
transannot
TransAnnot - a fast and all-in-one transcriptome annotation pipeline
art_marzooplclk
Accompanying repository for the publication "RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton"
bipartite_motif_finder
BMF: Bipartite Motif Finder
bmf-webserver
Web server for Bipartite Motif Finder (BMF)
bamm-benchmark
Scripts and data for generating the benchmarks in the W Ge, et al. paper.
contactpred-felsenstein
Felsenstein implementation for phylogeny correction
hhdatabase_pfam
Scripts to generate the pfam database for hh-suite
metaeuk-regression
Regression test suite for MetaEuk