shenwei356

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

rush

A cross-platform command-line tool for executing jobs in parallel

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

brename

A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression

kmcp

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

bio

A lightweight and high-performance bioinformatics package in Golang

perfect-bioinformatic-tools

What should perfect bioinformatic tools be like?

unikmer

a versatile toolkit for k-mers with taxonomic information

gtdb-taxdump

GTDB taxonomy taxdump files with trackable TaxIds

easy_qsub

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.

taxid-changelog

NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

bwt

Burrows-Wheeler Transform and FM-index in golang

ictv-taxdump

NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)

kmers

bit-packed k-mers methods for Golang

pand

Bitwise AND on two byte-slices using SIMD instructions

stable

Streaming pretty text table for Golang

rust-practice

Some tools in Rust for learning

util

Golang utility packages

cluster_files

cluster files into multiple directories by creating symbolic links or moving files

shenwei356

swr

Wei Shen' R utilities

bioconda-recipes

Conda recipes for the bioconda channel.

seqkit2_benchmark

xopen

open files for buffered reading and writing in #golang

conda

conda recipes for my tools

golang-combinations

Golang library which provide an algorithm to generate all combinations out of a given string array.

mof-search

BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours

pospop

Positional Population Count for Go