singularity-containers
There are 2 repositories under singularity-containers topic.
- nextflow
nextflow-io / nextflow
A DSL for data-driven computational pipelines
Language:Groovy 2564 - sregistry
singularityhub / sregistry
server for storage and management of singularity images
Language:JavaScript 103 Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs
Language:HTML 68command line tool for working with singularity hub and singularity containers
Language:Python 40- Language:Shell 26
- Language:R 19
intel / HPC-containers-from-Intel
Intel HPC Containers using Singularity
c3se / containers
The main platform for sharing all the information about AI/HPC-related containers at C3SE. See also the included tutorial to get started.
Language:Singularity 13sci-f / sci-f.github.io
The Scientific Filesystem Specification and Documentation
Language:CSS 12BU-ISCIII / nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Language:HTML 9singularity container tools for continuous integration and quality assessment
Language:Python 9CDAC-SSDG / hpc-containers
This repo holds the containers for HPC applications used and deployed by CDAC SSDG. It is a single point of contact for the container related issues or support required
jlboat / BioinfoContainers
Various Singularity recipes I've used to generate containers
supercontainers / sc19-tutorial
Getting Started with Containers on HPC
Language:C 6QuentinLetourneur / Let-it-bin
Optimize workflow for binning metagenomic short reads from multiple samples
Language:Nextflow 5- singularities
telatin / singularities
Scripts and notes for singularity containers used for bioinformatics analyses
Language:Perl 4 kinow / cylc-singularity
Singularity containers for Cylc
Language:Roff 3- Language:CSS 3
vsoch / singularity-nginx
web application to serve (simple) singularity images
Language:Python 3- Language:Perl 2
- Language:Shell 2
PSU-ICDS / containers
A collection of Dockerfiles and Singularity definition files used to build the containers that are used on the Roar cluster!
Language:Dockerfile 2these are the build scripts run by the robot builders, chosen by the user for a given build
Language:CSS 2command line tool for general HPC functions using Singularity containers
Language:CSS 2tensoralex / apptainer-fastai-container
A short tutorial on building an Apptainer image for fast.ai course/book
Language:Shell 2asadprodhan / sangerFlow
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
Language:Nextflow 1chipsneutrino / chips-env
Repository containing the standardised CHIPS software environments and associated containers.
Language:Python 1CHRUdeLille / vep_containers
VEP environments containerized for singularity
Language:Shell 1Grelot / bioinfo_singularity_recipes
A collection of singularity recipies for bioinformatic pipelines.
Language:Shell 1JBris / auto-apsim-singularity
Automatically build Apptainer images for APSIM
Language:Shell 1Install Singularity to your Debian/Ubuntu system
Language:Shell 1pranjaldhole / singularity-cellprofiler
Singularity-based linux container with CellProfiler 4 pre-installed into it.
Language:Shell 1singularityware / eb-singularity
Stuff related to integrating EasyBuild & Singularity
horothesun / singularity-conda-multiple-envs
Singularity containerization of a Conda-based multi-environment bash script.
Language:Shellnr23730 / singularity-docker
Build and run singularity images within a Docker container.
Language:Dockerfileolabiyi / qiime1-scripts
Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
Language:Shell
