There are 7 repositories under reproducible-science topic.
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
A DSL for data-driven computational pipelines
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
rrtools: Tools for Writing Reproducible Research in R
A workflow for reproducible and open scientific articles
A curated list of reproducible research case studies, projects, tutorials, and media
Create powerful Hydra applications without the yaml files and boilerplate code.
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Package an R workspace and all dependencies as a Docker container
Papers with code for single cell related papers
High performance spatial analysis in a web browser and across programming languages and hardware architectures
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
Everware is about re-useable science, it allows people to jump right in to your research code.
Data Analysis Workflows & Reproducibility Learning Resources
SEER, reimplemented in python 🐍🔮
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
List of Reproducible Audio Research Papers
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
Source code for the CERN Analysis Preservation portal
Reproducible Science: what, why, how
:microscope: Empirical CLI
unit-testing for a collection of jupyter notebooks using nbconvert
This is the repository for the Literate Programming Workshop
Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.
Learn to work more efficiently on empirical research projects.