sequence-analysis
There are 10 repositories under sequence-analysis topic.
- Language:C 1362
- biotite
biotite-dev / biotite
A comprehensive library for computational molecular biology
Language:Python 602 - Language:C 590
- seqan3
seqan / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Language:C++ 398 - Language:C++ 187
- Language:C 170
- Language:Cython 120
TimoLassmann / kalign
A fast multiple sequence alignment program.
Language:C 120- Language:F# 106
- Language:Jupyter Notebook 106
- SNPGenie
chasewnelson / SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Language:Perl 102 - Language:Python 98
Superzchen / iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Language:Python 90molbio-dresden / flexidot
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Language:Python 89- pyMSAviz
moshi4 / pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Language:Python 76 ggonnella / gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Language:Python 64althonos / peptides.py
Physicochemical properties, indices and descriptors for amino-acid sequences.
Language:Python 62nanoporetech / wub
Tools and software library developed by the ONT Applications group
Language:Python 61BioJulia / BioAlignments.jl
Sequence alignment tools
Language:Julia 60paulstothard / sequence_manipulation_suite
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
- Language:C 52
- protrLanguage:R 52
- HTStream
s4hts / HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Language:C++ 48 A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Language:Rust 38Edinburgh-Genome-Foundry / Geneblocks
:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
Language:Python 38soedinglab / spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Language:C 34SysBioChalmers / HGTphyloDetect
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
Language:Python 30evanotero / deep-music-genre-classification
🎵 Using Deep Learning to Categorize Music as Time Progresses Through Spectrogram Analysis
Language:Python 22jessicabonnie / dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
Language:Python 21safaad / aim
AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
Language:C 19biocpp / biocpp-core
BioC++ core library (alphabet, meta, ranges)
Language:C++ 18- Language:C 17
incertae-sedis / smof
Explore and analyze biological sequence data
Language:Python 16- Language:Rust 14
- Language:R 14
wyim-pgl / DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
Language:Perl 13
