There are 10 repositories under sequence-analysis topic.
A comprehensive library for computational molecular biology
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
A fast multiple sequence alignment program.
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Physicochemical properties, indices and descriptors for amino-acid sequences.
Tools and software library developed by the ONT Applications group
Sequence alignment tools
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
🎵 Using Deep Learning to Categorize Music as Time Progresses Through Spectrogram Analysis
Tool to estimate deltas for sequence sets and answer questions about relative contribution
AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
BioC++ core library (alphabet, meta, ranges)
Explore and analyze biological sequence data
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools