sequence-analysis
There are 9 repositories under sequence-analysis topic.
- Language:C 1317
- Language:C 581
- biotite
biotite-dev / biotite
A comprehensive library for computational molecular biology
Language:Python 560 - seqan3
seqan / seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Language:C++ 389 - Language:C++ 182
- Language:C 166
TimoLassmann / kalign
A fast multiple sequence alignment program.
Language:C 115- Language:Cython 110
- Language:Jupyter Notebook 106
- Language:F# 104
- SNPGenie
chasewnelson / SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Language:Perl 100 molbio-dresden / flexidot
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Language:Python 89Superzchen / iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Language:Python 83- pyMSAviz
moshi4 / pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Language:Python 67 ggonnella / gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Language:Python 64nanoporetech / wub
Tools and software library developed by the ONT Applications group
Language:Python 61BioJulia / BioAlignments.jl
Sequence alignment tools
Language:Julia 58paulstothard / sequence_manipulation_suite
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
althonos / peptides.py
Physicochemical properties, indices and descriptors for amino-acid sequences.
Language:Python 54- Language:C 52
- protrLanguage:R 51
- HTStream
s4hts / HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Language:C++ 48 Edinburgh-Genome-Foundry / Geneblocks
:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
Language:Python 36A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Language:Rust 34soedinglab / spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Language:C 33SysBioChalmers / HGTphyloDetect
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
Language:Python 28evanotero / deep-music-genre-classification
🎵 Using Deep Learning to Categorize Music as Time Progresses Through Spectrogram Analysis
Language:Python 22jessicabonnie / dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
Language:Python 20safaad / aim
AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
Language:C 19biocpp / biocpp-core
BioC++ core library (alphabet, meta, ranges)
Language:C++ 18incertae-sedis / smof
Explore and analyze biological sequence data
Language:Python 15- Language:Rust 14
wyim-pgl / DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
Language:Perl 13immunogenomics / TiRP
code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
Language:Jupyter Notebook 11vitaliy-ostapchuk93 / disease-pattern-miner
Disease Pattern Miner is a free, open-source mining framework for interactively discovering sequential disease patterns in medical health record datasets.
Language:Java 11- Language:C 10
