cell-cycle

There are 1 repository under cell-cycle topic.

seandavi / awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
rna-seq-data gene-expression scrna-seq-data bioinformatics awesome-list dimensionality-reduction cell-cycle atac-seq analysis cell-differentiation python clustering cell-populations gene-expression-profiles rna-seq-experiments cell-clusters analysis-pipeline data-integration data-visualization single-cell
2903
nsalomonis / altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
rna-seq-data alternative-splicing scrna-seq-data bioinformatics-pipeline clustering pathway-analysis network-analysis splicing-quantification splicing-visualization python fastq-anaysis bam-files single-cell-splicing cell-cycle cell-type-classification marker-gene-analysis graphical-interface command-line-tool pagerank louvain-community-detection
Language:Python 91
jhsiao999 / peco
Predict cell cycle phase in a continuum from single-cell RNA-seq data
cell-cycle single-cell-rna-seq
Language:R 12
chan-labsite / PCNAdeep
Track single cells and profile the cell cycle with PCNA fluorescence images
cell-cycle cell-biology bioinformatics-tool bioimage-tools bioimage-analysis
Language:Python 10
Population-Transcriptomics / Cell-Cycle-on-C1
Single-cell transcriptome analysis by fluorescence labeling
single-cell rna-seq cell-cycle fluorescence
Language:HTML 3
amoghpj / cell-cycle-models
What's all this talk about cell cycle models?
biology cell-cycle models ode
Language:Python 2
tallulandrews / CycleMix
single-cell-rna-seq cell-cycle
Language:R 2
dmattek / cell-cycle-1d
Interactive cell cycle analysis
cell-cycle shiny-apps single-cell single-cell-analysis
Language:R 1
hanjunlee21 / Lee-et-al-2023
RB represses cohesin-dependent loop formation and safeguards E2F-independent transcription
bioinformatics cell-cycle chromatin-interaction chromatin-organisation hi-c
Language:Jupyter Notebook 1
Jeff-Gui / PCNAdeep
Track single-cells and profile the cell cycle with PCNA images.
bioimage-informatics cell-biology cell-cycle
Language:Python 1
meyer-lab / DrugResponseModel.jl
This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.
oscillations cell-cycle academic-project systems-biology
Language:Jupyter Notebook 1
barberislab / Autonomous_minimal_cell_cycle_oscillator
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram Liebermeister and Matteo Barberis | NPJ Syst. Biol. Appl. (2020) | https://doi.org/10.1038/s41540-020-0125-0
systems-biology cell-cycle yeast oscillations limit-cycles
Language:Jupyter Notebook 0
barberislab / ChIP-exo_Fkh1_Fkh2
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | https://doi.org/10.1093/nar/gkz603
chip-exo cell-cycle systems-biology metabolism forkhead binder
Language:HTML 0
desszi6 / cell_cycle_circadian_clock_wnt_model
Bachelor thesis project : Simulation of the WNT protein's interations with the circadian clock-cell cycle system
bioinformatics analysis modelling modelcreater circadian-rhythm cell-cycle wnt simuation thesis-project matlab
Language:MATLAB 0
Roshni1999 / Computational-Systems-Biology-2020
Semester course project- Computational Systems Biology (BT5240)
automaton cell-cycle cell-population ode-model
Language:MATLAB 0
YangLab-um / interactive-cell-cycle
An interactive web application for exploring cell cycle models
biology cell-cycle ode-model simulation
Language:Python 0
JRaviLab / start-bycc
Modeling the START transition in the budding yeast cell cycle
cell-cycle dynamical-systems mathematical-modelling ode-model simulations
Mainakdeb / project-jurkat
PyTorch + images of human T lymphocyte cells (Jurkat cells)
cell-cycle pandas pytorch sklearn
Language:Jupyter Notebook
okadalabipr / Imoto2019
Imoto, H. & Okada, M. Signal-dependent regulation of early-response genes and cell cycle: a quantitative view. Curr. Opin. Syst. Biol. 15, 100–108 (2019).
bifurcation cell-cycle julia systems-biology
Language:Julia
Onkobioloogia / rakutsykliloeng
Molekulaarse rakubioloogia kursuse rakutsükli loeng
cell-cycle

cell-cycle

seandavi / awesome-single-cell

nsalomonis / altanalyze

jhsiao999 / peco

chan-labsite / PCNAdeep

Population-Transcriptomics / Cell-Cycle-on-C1

amoghpj / cell-cycle-models

tallulandrews / CycleMix

dmattek / cell-cycle-1d

hanjunlee21 / Lee-et-al-2023

Jeff-Gui / PCNAdeep

meyer-lab / DrugResponseModel.jl

barberislab / Autonomous_minimal_cell_cycle_oscillator

barberislab / ChIP-exo_Fkh1_Fkh2

desszi6 / cell_cycle_circadian_clock_wnt_model

Roshni1999 / Computational-Systems-Biology-2020

YangLab-um / interactive-cell-cycle

JRaviLab / start-bycc

Mainakdeb / project-jurkat

okadalabipr / Imoto2019

Onkobioloogia / rakutsykliloeng