htslib
There are 2 repositories under htslib topic.
- Language:C 772
- Language:C++ 454
- Language:Cython 357
- Language:Nim 153
- Language:C++ 143
- Language:C++ 132
brentp / hts-python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
Language:Python 49- Language:C 28
- Language:Python 23
Zilong-Li / vcfpp
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
Language:C++ 18- Language:Zig 13
- Language:Crystal 10
biodata-fun / htslib_howto
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
Language:C 10- Language:C 9
- Language:C 9
- Language:Ruby 7
bio-cr / bam-filter
Use simple expressions to filter a BAM/CRAM file
Language:C 5- Language:C++ 4
- Language:C 3
- Language:C++ 2
- Language:C 1
innovate-invent / bampy
Python implementation of htslib supporting BAM, SAM, and BGZF compression
Language:Python 1- Language:Zig 1
lindenb / htsplusplus
Select variants from VCF/BCF spaced by a distance 'd'.
Language:C++ 1YuzukiTsuru / TTS-Tools
Some useless thing for Speech Synthesis System
Language:C 1CHRUdeLille / bcftools_containers
bcftools singularity container
Language:Shell 0- Language:C++ 0
aleighbrown / facets_snakemake
Pipeline for running the FACETS copy number caller using Snakemake
Language:R- Language:Python
Grelot / reserveBenefit--snpsdata_analysis
Codes i wrote for the paper "genomic resources for Mediterranean fishes"
Language:Shellhiruna72 / samtools
[CMake build] Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:Crhpvorderman / htspy
Fast pythonic BAM processing according to the HTS format specifications..
Language:C- Language:C++
