precision-medicine
There are 14 repositories under precision-medicine topic.
mims-harvard / TDC
Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science
Language:Jupyter Notebook 963cBioPortal / cbioportal
cBioPortal for Cancer Genomics
Language:Java 581Precision Medicine Knowledge Graph (PrimeKG)
Language:Jupyter Notebook 358GenomicsDB / GenomicsDB
High performance data storage for importing, querying and transforming variants.
Language:C++ 90drizopoulos / JMbayes2
Extended Joint Models for Longitudinal and Survival Data
Language:R 73TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design
Language:Jupyter Notebook 56nt-williams / lmtp
:package: Non-parametric Causal Effects Based on Modified Treatment Policies :crystal_ball:
Language:R 55rhshah / IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Language:Perl 55poseidonchan / TAPE
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
Language:Jupyter Notebook 47jakelever / cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
Language:R 40aquaskyline / Skyhawk
An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
Language:Python 35KCCG / mity
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
Language:Python 35jaredhuling / personalized
Methods for subgroup identification / personalized medicine / individualized treatment rules
Language:R 31- Language:Python 21
- pasmopyLanguage:Python 17
ablucher / The-Cancer-Targetome
Initial data release for drug-target interactions of the cancer targetome.
Language:Java 13- Language:R 12
NCBI-Hackathons / phenotypeXpression
Subclassification of disease states based on the intersection of literature and expression
Language:Python 12- Language:JavaScript 11
cancervariants / therapy-normalization
Services and guidelines for normalizing drug and other therapy terms
Language:Python 10NCBI-Codeathons / OMOPOmics
Patient 'omics data in OMOP format
Language:HTML 9- TractLearn-WholeBrain
GeodAIsics / TractLearn-WholeBrain
TractLearn is a Manifold Learning Toolbox for precision medicine. The first application is for Diffusion-Weighted MRI quantitative analysis.
Language:Python 8 knowledgesystems / mutationhotspots
Algorithms to detect mutational hotspots
Language:Java 8YuxingLu613 / HTML
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
Language:Python 8matthew-mcateer / NIPS2017competition
Data & Scripts for the Memorial Sloan Kettering Cancer Center's (MSKCC) request for a machine learning algorithm that, using annotated information on genomic variants, automatically classifies genetic variations as either neutral or cancerous.
Language:Jupyter Notebook 6isotlaboratory / Healthcare-Security-Analysis-MLE
Official repo of the article: Briguglio, W., Moghaddam, P., Yousef, W. A., Traore, I., and Mamun, M. (2021) "Machine Learning in Precision Medicine to Preserve Privacy via Encryption". arXiv Preprint, arXiv:2102.03412.
Language:C# 5scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorders
Language:Jupyter Notebook 5Services and guidelines for normalizing disease terms
Language:Python 4- Language:JavaScript 4
- Language:Groovy 4
ICBI / Open-Science-Projects
Open Science Projects at Georgetown-ICBI
smartdata-analysis-and-statistics / precmed
A doubly robust precision medicine approach to estimate and validate conditional average treatment effects
Language:R 4Duran-FerrerM / Pan-B-cell-methylome
Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.
Language:R 3- DITTO-UI
uab-cgds-worthey / DITTO-UI
Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores.
Language:Python 3 janschneida / taxodist
Python library for similarity calculations in taxonomic hierarchies and the underlying concepts.
Language:HTML 2
