There are 0 repository under sge topic.
A DSL for data-driven computational pipelines
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
Tools for computation on batch systems
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
:rocket: R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
IBM LSF manual translation and practical experience
An information-theoretic pipeline for methylation analysis of WGBS data
Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.
Module to create DAG Task and Manage Task on SGE
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
runjob is a program for managing a group of related jobs running on a compute cluster
:rocket: R package future.clustermq: A Future API for Parallel Processing using 'clustermq'
:rocket: R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]
A simple job manager for PBS (Portable Batch System)
This repository contains a subset of the FieldTrip code related to distributed computing
Running cellprofiler on eddie3 / SGE clusters
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
A library to access different kinds of cluster backends
Easily submit and query output of HPC jobs (MPI, SMP) using predefined templates and helpers in (Son of) Grid Engine.