sge

There are 0 repository under sge topic.

nextflow
nextflow-io / nextflow
A DSL for data-driven computational pipelines
aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine
Language:Groovy 2555
implus / PytorchInsight
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
pytorch classification detection state-of-the-art pretrained-models sknet senet gcnet cbam bam sge cnn cnn-tricks tricks shufflenetv2 training-shufflenetv2 convolutional-networks weight-decay attention-models weight-normalization-family
Language:Python 857
mllg / batchtools
Tools for computation on batch systems
cran batchjobs batchexperiments slurm lsf sge docker-swarm torque openlava parallel-computing r high-performance-computing reproducibility hpc hpc-clusters
Language:R 169
mschubert / clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
cluster high-performance-computing lsf r-package sge slurm ssh
Language:R 144
HenrikBengtsson / future.batchtools
:rocket: R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools
r package hpc parallel distributed-computing torque slurm sge job-scheduler pbs
Language:R 83
Ensembl / ensembl-hive
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
ensembl workflow-management-system perl java python mysql sqlite postgresql high-performance-computing lsf sge htcondor pbs-pro pipeline pbspro ehive docker docker-swarm slurm
Language:Perl 50
qtop / qtop
qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:
lsf oar pbs pbs-torque pbspro sge sgecore slurm slurm-cluster slurm-job-scheduler slurm-workload-manager
Language:Python 33
datasnakes / OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python bioinformatics orthologs biology phylogenetics ncbi ftp blast qsub orthology-inference pbs bash shell genetics sequence-alignment orthology orthologues sge biosql data-science
Language:Python 27
baiyongan / lsf-handbook
IBM LSF manual translation and practical experience
lsf-manual lsf hpc-cluster hpc ibm cluster handbook high-performance-computing lsf-jobs job-scheduler manual pbs sge slurm
Language:HTML 25
GarrettJenkinson / informME
An information-theoretic pipeline for methylation analysis of WGBS data
bioinformatics methylation matlab cpp bash r next-generation-sequencing ising-model information-theory sge parameter-estimation parallel-computing slurm
Language:MATLAB 25
FlyPythons / DAGflow
Module to create DAG Task and Manage Task on SGE
sge python pipeline-framework workflow
Language:Python 20
pyiron / pysqa
Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.
hpc lsf moab python queue-manager sge slurm torque
Language:Python 19
wangkaisine / SGE-On-CentOS
Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7
sge centos7
19
HECBioSim / Longbow
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
high-performance-computing job-submission automation scientific-computing pbs-pro torque lsf-jobs slurm sge bioinformatics biosimulation molecular-dynamics gromacs amber lammps namd charmm supercomputer job-scheduler job-queue
Language:Python 17
relleums / qstat
parse Grid Engine qstat job info list into a list of python dicts
python qstat qsub queue sge sun-grid-engine
Language:Python 11
adigorla / xgap
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
ngs snv indels bioinformatics-pipeline bioinformatics genomics hpc slurm sge pipeline-framework
Language:Python 10
zenotech / MyCluster
Utilities to support interacting with multiple HPC clusters
python scrutinizer multiple-hpc-clusters mycluster slurm sge gridengine lsf pbs-torque hpc-cluster hpc pypi-package python3
Language:Python 10
HenrikBengtsson / future.clustermq
:rocket: R package future.clustermq: A Future API for Parallel Processing using 'clustermq'
r package parallel distributed-computing hpc sge lsf torque pbs slurm
Language:R 9
yodeng / runjob
runjob is a program for managing a group of related jobs running on a compute cluster
python sge cluster hpc qsub qsub-toolbox bioinformatics-pipeline workflow
Language:Python 9
HenrikBengtsson / future.BatchJobs
:rocket: R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]
r package hpc parallel distributed-computing parallel-computing torque job-scheduler slurm pbs sge
Language:R 8
zengxiaofei / PJM
A simple job manager for PBS (Portable Batch System)
torque pbs bioinformatics-pipeline sge
Language:Python 8
fieldtrip / qsub
This repository contains a subset of the FieldTrip code related to distributed computing
matlab distributed-computing torque slurm sge parallel-computing
Language:MATLAB 6
NYU-Molecular-Pathology / util
Utility modules for Python
python sge bioinformatics utility slurm
Language:Python 6
zengxiaofei / snodes
Some scripts for managing nodes and jobs on SGE
sge cluster-management grid-engine
Language:Python 6
blitzcti / sgecti
Sistema de Gerenciamento de Estágio - Blitz - CTI
laravel laravel-framework mvc php php7 adminlte sge cti blitz xampp
Language:HTML 5
CarragherLab / cptools2
Running cellprofiler on eddie3 / SGE clusters
cellprofiler python sge biology imaging-informatics hpc-cluster
Language:Python 4
datasnakes / htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
htseq htseq-count-cluster cluster sge htseq-count rnaseq cli
Language:Python 4
indigo-dc / bdocker
Execution and management of Docker containers in batch systems.
batch-systems sge docker docker-container daemon
Language:Python 4
jrhawley / Terminal
Custom terminal setup for Linux and Mac
terminal bashrc-configs bash-alias vimrc tmux-conf sge linux anaconda keyboard
Language:Shell 3
prod-feng / sge-gpu
Patch files for SGE, Grid Engine, built-in support for multiple GPUs scheduling, set CUDA_VISIBLE_DEVICES for jobs, no load sensor needed
engine gpu grid hpc sge
3
TheRoddyWMS / BatchEuphoria
A library to access different kinds of cluster backends
job-scheduler pbs batch cluster lsf sge roddy
Language:Groovy 3
alichry / sge-utils
Easily submit and query output of HPC jobs (MPI, SMP) using predefined templates and helpers in (Son of) Grid Engine.
sge gridengine qsub mpi
Language:Shell 2
datasnakes / qsubmitter
An R package to submit arbitrary jobs to a remote SGE cluster
qsub sge r
Language:R 2
paultsw / mnist_mpi
Proof-of-concept, MPI-based distributed training of a neural network on SGE HPCs.
distributed pytorch mpi sge hpc
Language:Python 2
willem4 / sge_tools
Tools for parsing sun grid engine logging files
sge qacct python pandas
Language:Python 2
yodeng / qsubwt
Simple wrapper for qsub which provides the functionality of the '-sync' option
qsub sync sge
Language:Python 2

sge

nextflow-io / nextflow

implus / PytorchInsight

mllg / batchtools

mschubert / clustermq

HenrikBengtsson / future.batchtools

Ensembl / ensembl-hive

qtop / qtop

datasnakes / OrthoEvolution

baiyongan / lsf-handbook

GarrettJenkinson / informME

FlyPythons / DAGflow

pyiron / pysqa

wangkaisine / SGE-On-CentOS

HECBioSim / Longbow

relleums / qstat

adigorla / xgap

zenotech / MyCluster

HenrikBengtsson / future.clustermq

yodeng / runjob

HenrikBengtsson / future.BatchJobs

zengxiaofei / PJM

fieldtrip / qsub

NYU-Molecular-Pathology / util

zengxiaofei / snodes

blitzcti / sgecti

CarragherLab / cptools2

datasnakes / htseq-count-cluster

indigo-dc / bdocker

jrhawley / Terminal

prod-feng / sge-gpu

TheRoddyWMS / BatchEuphoria

alichry / sge-utils

datasnakes / qsubmitter

paultsw / mnist_mpi

willem4 / sge_tools

yodeng / qsubwt