Sean Davis's repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
awesome-cancer-variant-resources
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
BiocPkgTools
Computable build reports, package metadata, and download stats from the Bioconductor project
curatedMetagenomicsNextflow
Curated Metagenomics Data Nextflow workflows
campus-llm-kb
campus-llm-kb
state-cancer-profile-scraper
Bulk access and download state cancer profiles data
BiocBuildDB
Longitudinal Bioc build database
pubmed_parser
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
refinebioc
The bridge between refine.bio and Bioconductor
2024-r-intro-bigcare
Intro to R for BigCare 2024
apogee-project
Apogee: An AI-Powered Grant Evaluation Ecosystem
cmgd-data-engineering
Pipelines for cmgd data engineering
cmgd_nextflow_worker
worker for running curatedmetagenomicsdata nextflow pipelines
cu_clinical_genomics
Capture information regarding CU clinical genomics efforts
curatedMetagenomicDataCuration
Sample Metadata Curation for curatedMetagenomicData
foundation-medicine-xml-parser
A simple xml-to-csv parser for Foundation Medicine XML reports
icc-eval-core
(WIP) Tools for collecting and reporting CFDE metrics
icc-eval-reports
Reporting infrastructure for CFDE Centers, DCCs, and Partnerships
manim
Animation engine for explanatory math videos
nextflow_telemetry
Python web api for nextflow web callbacks