sokrypton

ColabFold

Making Protein folding accessible to all!

ColabDesign

Making Protein Design accessible to all via Google Colab!

GREMLIN_CPP

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

af2bind

af_backprop

ColabBio

random colab notebooks for biology

RFdiffusion

Code for running RFdiffusion

algosb_2021

for algosb workshop

HelixFold

laxy

lazy wrapper around jax

TrDesign_partialhall

TrDesign w/ Partial Hallucination support

OmegaFold

OmegaFold Release Code

GREMLIN_LH

RoseTTAFold2

seqsal_v2

AfDesign_partial

WIP

DeepLearningExamples

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

EMBOIntegModelling23

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

ws2023

AccAdam_TF2

TF2-compatible Accumulated Gradients for Adam

alphafold

Open source code for AlphaFold.

AM216

Material for lecture

casp15_analysis

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

af_tests

ColabDesign_params

params moved to seperate repo

esm3

responsiblereview