There are 6 repositories under virtual-screening topic.
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
active learning for accelerated high-throughput virtual screening
Official repository for the Deep Docking protocol
pythonic interface to virtual screening software
DENOPTIM is a software package for de novo design and virtual screening of functional molecules of any kind.
HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS
Official Github for "PharmacoNet: Accelerating Large-Scale Virtual Screening by Deep Pharmacophore Modeling" (NeurIPS 2023 Workshop)
screenlamp is a Python toolkit for hypothesis-driven virtual screening
Improving Structure-Based Virtual Screening with Ensemble Docking and Machine Learning
Open source code for DyScore
Automated framework for the curation of chemogenomics data and to develop QSAR models for virtual screening using the open-source KNIME software
Extract Molecular SMILES embeddings from language models pre-trained with various objectives architectures.
A pipeline to do virtual screening
Datasets used in the tox21 challenge
A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed by graph theoretic constraint counting on the covalent and noncovalent bond network. Raschka et al. (2016) Proteins: Structure, Function, and Bioinformatics
QSAR models and putative agents identified against SARS-CoV-2
Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library
Open-Sourced. Millions of small molecules will be downloaded from the ZINC database in 3D SDF file format, with one click, to get ready for a large scale virtual screening for certain protein target.
Virtual screening on PriA-SSB with the AMS and Enamine REAL libraries
Create customized voxel representations of protein-ligand complexes using GPU.
All in one Structure-Based Vitual Screening workflow based on the concept of consensus docking.
Data accompanying the manuscript on SIFts- and ML-based methods in Virtual Screening for RNA binding ligands.
Maximal Unbiased Benchmarking Datasets for Histone Deacetylases and Sirtuin Family
This repository contains all the course materials that are used in the "Chemo-informatics and computational drug design" course teaches at the University of Antwerp (Belgium)