cell-differentiation

There are 2 repositories under cell-differentiation topic.

seandavi / awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
rna-seq-data gene-expression scrna-seq-data bioinformatics awesome-list dimensionality-reduction cell-cycle atac-seq analysis cell-differentiation python clustering cell-populations gene-expression-profiles rna-seq-experiments cell-clusters analysis-pipeline data-integration data-visualization single-cell
2898
settylab / Mellon
Non-parametric density inference for single-cell analysis.
density-estimation single-cell cell-differentiation differentiable gaussian-processes
Language:Jupyter Notebook 24
zhaoyanglab / ML-for-PSC-differentiation
Code and data accompanying "A live-cell image-based machine learning strategy for reducing variability in PSC differentiation systems", Cell Discov 9, 53 (2023).
cell-differentiation image-analysis machine-learning
Language:Jupyter Notebook 6
guanjue / snapshot_pre
Snapshot: a model-free method for clustering and visualizing epigenomic data
atac-seq-signal cell-differentiation data-clustering data-visualization epigenetic-data heatmap
Language:C++ 3
guanjue / vision_index_set
VISION-Index-Set
cell-differentiation snapshot lineage atac-seq-signal
Language:R 2
michellefli / cell-diff-reu-2018
dimensionality-reduction principal-component-analysis diffusion-maps cell-differentiation tsne
Language:R 0