nucleotides
There are 0 repository under nucleotides topic.
- Language:F# 105
Genomicsplc / variantkey
Numerical Encoding for Human Genetic Variants
Language:C 36BioJulia / BioSymbols.jl
Nucleic and amino acid primitive types
Language:Julia 30pnnl / mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Language:Python 18raw-lab / mercat2
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Language:HTML 10- Python-Sars-Cov-2-Mutation-Analysis
tonygeorge1984 / Python-Sars-Cov-2-Mutation-Analysis
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
Language:Python 8 xduan7 / bioseq-learning
deep learning experiments on biological sequences with PyTorch
Language:Python 6burkesquires / FeaVar
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Language:Clarion 3- Language:Python 3
zenodeapp / pairwise-alignments
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
Language:Solidity 3- Language:Java 2
mutalyzer / backtranslate
Protein to RNA reverse translation
Language:Python 2OscBacon / tpe-adn
A website made for a year-long school project on how store data in DNA, using a nucleotides as our code. The website was made using the Flask framework to incoporate some python programs
Language:JavaScript 2sarthakkg / GeneFinderFromDNA
Extracts all of the possible genes from a string of DNA
Language:Java 2TomMakesThings / Phylogenetic-Tree-Inference
Inferring likelihood and mutation rate of an evolutionary tree through the Jukes-Cantor model and Felsenstein’s algorithm
Language:Jupyter Notebook 2- Language:Go 1
adomingues / filterReads
Filter alignments on sequence length and/or identity of first nucleotide.
Language:Python 1balazshorvathreal / MegaVir
MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.
Language:R 1dangtunguyen / ThreeDNASequencesAlignment
Implementation of space-saving three DNA sequences alignment
Language:Java 1DarkAdin / PythORF
A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.
Language:Python 1- Language:Python 1
FelixErnst / Modstrings
:package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
Language:R 1myon-bioinformatics / search_seq_including_spaces
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
Language:Python 1PetePrattis / Chimeric-Alignment-problem
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
Language:Python 1A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
Language:Python 1A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
Language:Python 1r-amaro / DNA-NucleotideScanner
This C program scans through DNA nucleotides and stores, then prints the 'words' of size 10 along with their locations.
Language:C 1- pngcat-client
shamseen / pngcat-client
API repo: https://github.com/shamseen/pngcat-api
Language:JavaScript 1 univieCUBE / genskew
GenSkew is an application for computing and plotting nucleotide skew data.
Language:Python 10xnu / nwunsch_lua
Needleman–Wunsch algorithm implementation in Lua.
Language:Lua 0JanColon / Amino-Acid-Finder
A tool to find amino acids associated with RNA and DNA nucleotide chains.
Language:Python 0- Language:Python 0
wennj / pileupReformater
Convert output from Samtools pileup into a matrix.
Language:Java 0zhukovanadezhda / dinucleo-freq
📊🧬 Dinucleotide frequencies in the genome of model organisms 🐁🦠
Language:Jupyter Notebook 0MoutPessemier / NucleotideMSA-Assignment
In this assignment, I had to create an application for a team of Bio-Informaticians to work on nucleotide multiple sequence alignments (MSA). The application is a command line application, no GUI is provided.
Language:Javataofeekaoyusuf / dna-nucleotide-count-web-app
This is a web application to count the nucleotides composition in a DNA sequence sample.
Language:Python
