rna-modifications

There are 0 repository under rna-modifications topic.

xpore
GoekeLab / xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
rna modification transcriptomics machine-learning genomics nanopore-sequencing rna-seq rna-modifications nanopore python
Language:Python 128
tleonardi / nanocompore
RNA modifications detection from Nanopore dRNA-Seq data
bioinformatics nanopore rna-modifications
Language:Python 75
OpenOmics / modr
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
direct-rna-sequencing oxford-nanopore rna-editing rna-modifications singularity snakemake-pipeline bioinformatics novel-transcripts pipeline quality-control transcriptomics known-transcripts polya-tail-length-estimation alternative-splicing-analysis differential-expression-analysis
Language:Python 6
mevers / RNAModR
Repository for the R package RNAModR
epitranscriptomics rna-modifications
Language:R 3
y9c / cpup
Convert mpileup format to base count tsv table
bioinformatics mutations mpileup samtools rna-modifications snp-genotyping dna-modifications
Language:C++ 3
JiayiLi21 / NanoML-5moU
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
machine-learning nanopore-sequencing rna-modifications
Language:Jupyter Notebook 2
FelixErnst / Modstrings
:package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
bioconductor biostrings dna dna-modifications modified-nucleotides nucleotides rna rna-modification-alphabet rna-modifications sequences
Language:R 1
GilbertLabUCSF / Decitabine-treatment
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
bioinformatics dna-methylation drug-discovery rna-modifications
Language:Jupyter Notebook 1
harrlol / hamrtools
handful of tools that might be needed before or after HAMR
bioinformatics bioinformatics-pipeline epitranscriptomics rna-modifications rna-seq
Language:R 1
monimaanam / Modomics_Decoder
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
epitranscriptomics modomics rna first-contributions practice-project rna-modifications rna-sequence
Language:Python 0
harrlol / hamrbox
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
bioinformatics bioinformatics-pipeline epitranscriptomics ngs rna-modifications rna-seq
Language:R