There are 8 repositories under pdb topic.
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
ChatDBG - AI-assisted debugging. Uses AI to answer 'why'
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
A dependency-free cross-platform swiss army knife for PDB files.
Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.
A Python API for the RCSB Protein Data Bank (PDB)
Cross-platform tool that allows browsing and extracting C and C++ type declarations from PDB files.
A tool to make Windows builds reproducible. (UNMAINTAINED)
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
A Python script to download PDB files associated with a Portable Executable (PE)
Protein Secondary Structure predictor using Convolutional Neural Networks
C-library for calculating Solvent Accessible Surface Areas