pdb

There are 8 repositories under pdb topic.

icsharpcode / ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
c-sharp decompile decompiler decompiler-engine dotnet dotnetcore ilspy mono pdb unity
Language:C# 20201
inducer / pudb
Full-screen console debugger for Python
python debugger pytest pytest-plugin pdb ipython bpython urwid debug
Language:Python 2874
pdbpp / pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
python pdb debugger completion syntax-highlighting
Language:Python 1248
crosire / blink
A tool which allows you to edit source code of any MSVC C++ project live at runtime
c-plus-plus linker pdb live-coding
Language:C++ 1031
ajkhoury / ReClassEx
ReClassEx
reclass rtti symbols pdb memory-analysis reclassex reclass64 reclassx64 x64 2015 2016 2017 reclass2015 reclass2016 reclass2017
Language:C++ 830
spiside / pdb-tutorial
A simple tutorial about effectively using pdb
debugger python pdb tutorial
Language:Python 829
MolecularNodes
BradyAJohnston / MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
blender biochemistry geometry-nodes protein protein-structure protein-visualization sciart visualisation structural-biology blender-addon protein-data-bank molecule proteins pdb molecular-modeling
Language:Python 785
PDBRipper
horsicq / PDBRipper
PDBRipper is a utility for extract an information from PDB-files.
pdb-files pdb-parser pdb reverse-engineering hacktoberfest hacktoberfest2023
Language:C 746
plasma-umass / ChatDBG
ChatDBG - AI-assisted debugging. Uses AI to answer 'why'
debugger debugging-tools gpt-3 python lldb c-programming cpp-programming pdb
Language:C++ 708
BioPandas / biopandas
Working with molecular structures in pandas DataFrames
molecular-structures pandas-dataframe pdb mol2 protein-structure molecules pdb-files drug-discovery computational-biology bioinformatics molecule
Language:Python 682
sakhnik / nvim-gdb
Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB
gdb neovim lldb nvim-gdb pdb bashdb
Language:Lua 673
biojava / biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
bioinformatics java protein-structure genomics protein-sequences protein-modification sequence-alignment structure-alignment protein-data-bank pdb parser-library structural-bioinformatics
Language:Java 574
mdtraj / mdtraj
An open library for the analysis of molecular dynamics trajectories
molecular-dynamics python mdtraj rmsd dihedral-angles pdb pdb-files molecular-dynamics-trajectories
Language:Python 546
Mixaill / FakePDB
Tool for PDB generation from IDA Pro database
llvm pdb ida idapython cpp debugging
Language:C++ 494
charnley / rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
rmsd xyz pdb alignment molecule structure reordering kabsch atoms assignment
Language:Python 464
plip
pharmai / plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
scientific-computing bioinformatics protein-structure plip singularity python-bindings openbabel pdb docker
Language:Python 397
haddocking / pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
python protein pdb bioinformatics structural-biology structural-bioinformatics rcsb utrecht-university
Language:Python 352
getsentry / pdb
A parser for Microsoft PDB (Program Database) debugging information
microsoft-pdb pdb debugging rust-library tag-production
Language:Rust 345
cansarigol / pdbr
pdb + Rich library
pdb python debugger debugger-color ipython celery rich traceback
Language:Python 319
ergrelet / windiff
Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.
diff ntoskrnl pdb portable-executable reverse-engineering web win32 windows undocumented nextjs rust syscalls insider preview
Language:Rust 306
williamgilpin / pypdb
A Python API for the RCSB Protein Data Bank (PDB)
pdb blast proteomics protein-structure protein-sequences proteins protein-data-bank
Language:Python 292
ionelmc / python-remote-pdb
Remote vanilla PDB (over TCP sockets).
python debugging pdb
Language:Python 261
jasonwhite / ducible
A tool to make Windows builds reproducible. (UNMAINTAINED)
pdb reproducible-builds dll build-automation linux windows visual-studio
Language:C 258
ergrelet / resym
Cross-platform tool that allows browsing and extracting C and C++ type declarations from PDB files.
pdb cross-platform linux reverse-engineering symbols windows cli diff gui rust web ntoskrnl
Language:Rust 256
bioSyntax / bioSyntax
Syntax highlighting for computational biology
bioinformatics computational-biology syntax-highlighting less vim gedit sublime-text bam vcf fasta pdb
Language:Shell 246
kmaork / madbg
A fully-featured remote and preemptive debugger for python
python python-library debugger debugger-library tty terminal pty pdb ipdb remote-debug remote-debugger ipython-debugger cli tty-features attach preemptive
Language:Python 228
p2rank
rdk / p2rank
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
bioinformatics machine-learning protein-structure pdb binding-sites proteins ligand protein-surface structural-bioinformatics protein-ligand-interactions java random-forest mmcif pymol groovy protein-ligand-docking molecular-structures drug-discovery virtual-screening p2rank
Language:Groovy 220
HoShiMin / formatPE
A bunch of parsers for PE and PDB formats in C++
cpp header-only modern-cpp pdb pdb-files pdb-parser pdb-structure pe pe-analyzer pe-applications pe-file pe-format portable-executable pe-parser
Language:C++ 211
gotcha / vimpdb
Pdb and Vim integration
python vim pdb
Language:Python 201
nblock / pdb-cheatsheet
A cheatsheet for the Python Debugger (pdb)
python cheatsheet pdb latex
Language:TeX 190
rna-tools
mmagnus / rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
rna-puzzle rna-pdb pdb rna rna-structure rosetta simrna bioinformatics python rna-tools
Language:Jupyter Notebook 137
PDB-REDO / dssp
Application to assign secondary structure to proteins
dssp pdb proteins
Language:C++ 135
zouxianyu / query-pdb
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
modern-cpp pdb pdb-parser webserver
Language:C++ 131
LucaAngioloni / ProteinSecondaryStructure-CNN
Protein Secondary Structure predictor using Convolutional Neural Networks
structure-prediction protein-prediction cnn chain machine-learning deep-learning protein-structure keras pdb cullpdb
Language:Python 108
p0dalirius / pdbdownload
A Python script to download PDB files associated with a Portable Executable (PE)
pdb microsoft debug portable-executable tool download pe
Language:Python 108
mittinatten / freesasa
C-library for calculating Solvent Accessible Surface Areas
c bioinformatics structural-biology pdb
Language:C 102

pdb

icsharpcode / ILSpy

inducer / pudb

pdbpp / pdbpp

crosire / blink

ajkhoury / ReClassEx

spiside / pdb-tutorial

BradyAJohnston / MolecularNodes

horsicq / PDBRipper

plasma-umass / ChatDBG

BioPandas / biopandas

sakhnik / nvim-gdb

biojava / biojava

mdtraj / mdtraj

Mixaill / FakePDB

charnley / rmsd

pharmai / plip

haddocking / pdb-tools

getsentry / pdb

cansarigol / pdbr

ergrelet / windiff

williamgilpin / pypdb

ionelmc / python-remote-pdb

jasonwhite / ducible

ergrelet / resym

bioSyntax / bioSyntax

kmaork / madbg

rdk / p2rank

HoShiMin / formatPE

gotcha / vimpdb

nblock / pdb-cheatsheet

mmagnus / rna-tools

PDB-REDO / dssp

zouxianyu / query-pdb

LucaAngioloni / ProteinSecondaryStructure-CNN

p0dalirius / pdbdownload

mittinatten / freesasa