FelixErnst

MicrobiomeExperiment

Bioconductor defining a SummarizedExperiment class for microbiome data

Structstrings

:package: Structstrings: implementation of Biostrings to work with dot bracket annotations

RNAmodR

:package: RNAmodR: detection of post-transcriptional RNA modifications based on HTS data

RNAmodR.AlkAnilineSeq

:package: RNAmodR.AlkAnilineSeq: detection of m7G, m3C and D modification by AlkAnilineSeq

tRNAscanImport

:package: Importing tRNAscan-SE output as GRanges

xtail-1

Genome-wide assessment of differential translations with ribosome profiling data

EpiTxDb.Mm.mm10

AnnotationDb for post-transcriptional modifications (Mmusculus.mm10)

Modstrings

:package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

RNAmodR.ML

:package: RNAmodR.ML: machine learning for detection of post-transcriptional RNA modifications

RNAmodR.RiboMethSeq

:package: RNAmodR.RiboMethSeq: detection of 2'-O methylations by RiboMethSeq

tRNA

:package: tRNA: Analyzing tRNA sequences and structures

tRNAdbImport

:package: tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRanges

EpiTxDb

:package: EpiTxDb: storing and accessing epitranscriptomic information using the AnnotationDbi interface

BiocChallenges

Challenges for the Biocoductor community.

BiocPkgTools

Computable build reports, package metadata, and download stats from the Bioconductor project

biocthis

Automate package and project setup for Bioconductor packages

Biostrings

Efficient manipulation of biological strings

CreateAPackage

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

DirichletMultinomial

drat

Drat R Archive Template

EpiTxDb.Hs.hg38

AnnotationDb for post-transcriptional modifications (Hsapiens.hg38)

EpiTxDb.Sc.sacCer3

AnnotationDb for post-transcriptional modifications (Scerevisiae.sacCer3)

EuroBioc2020

FelixErnst

RevigoR

wrapper for revigo analysis

RNAmodR.Data

:package: :floppy_disk: Example data for RNAmodR package

scater

Clone of the Bioconductor repository for the scater package.

TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

xtail