Computational Systems Biology

BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.

FSharp.FGL

Functional graph library for F#

FSharpAux

Auxiliary functions and data structures for the F# programming language

BioFSharp.Mz

BioFSharp.Mz - modular computational proteomics

deepStabP

A small web ui and python api service to predict protein melting point temperatures.

ProteomIQon

DynamicObj

F# library supporting Dynamic Objects including inheritance in functional style

CSBlog

The blog about all things CSB

MzIO

Generic data model to unify various readers and writers for different formats used in protein mass spectrometry

TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

LitXml

Small FSharp based DSL for writing literal xml

BIO-BTE-06-L-7

Notebooks, scripts and guides for the computational section of VM 1/ VM 2: Practical class - Molecular Biotechnology II (BIO-BTE-06-L-7)

FsDocker

F# Client for Docker Remote API based on Docker.DotNet Project

YAMLicious

BioFSharp.Vis

Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms

iMLP

codebase and dotnet CLI tool for prediction of iMTS-Ls

OBO.NET

An OBO file format parser, written in F#.

Slurmi

BIO-MBP-06-U-2

Notebooks for the practical course

csbiology.github.io

Website for teaching, publications and news from CSB (Computational Systems Biology)

Drafo

iMLP_Web

codebase of our webservice for prediction of iMTS-Ls

BIO-BTE-10-L-4

Project suggestions for the project work for Wissenschaftliche Programmierung für Biolog*innen (BIO-BTE-10-L-4)

FSharpSpreadsheetML

FSharp wrapper for Open XML SDK, allowing Excel File reading and manipulation

TempClass

Package for fitting and classification of short and noisy time series using constrained smoothing splines.

BioInfoIntro

ChlamyAtlas

Chlamy Atlas is a AI-powered web application which predicts the localizations of proteins from the Green Algae Chlamydomonas reinhardtii.

FsODE

Ordinary Differential Equation (ODE) Models in F#

FsOntology

A toolkit for working with ontology data structures in .NET

OntologyEnrichment

Command line tool to perform functional annotation and ontology enrichments for Chlamydomonas and Arabidopsis