chromosomes
There are 0 repository under chromosomes topic.
- Language:Python 167
- Language:Python 104
- Language:Python 47
estebanpw / chromeister
A dotplot generator for large chromosomes
Language:C 42yulvil / chromosome-browser
Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme
Language:HTML 22lukasuz / Banding-Pattern-Extraction
Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.
Language:Python 17marccasian / KaryML-Framework
Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.
Language:Python 14monarch-initiative / monochrom
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
Language:Python 13- Language:Python 13
- GeneticAlgorithm
AliMarouf97 / GeneticAlgorithm
The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.
Language:C++ 7 - napari-kics
mpicbg-csbd / napari-kics
A plugin to estimate chromosome sizes from karyotype images.
Language:Python 6 a-thind / ideogram
HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js
Language:R 5- Language:Python 5
egonw / wikipathways-chromosomes
Mapping WikiPathways to chromosomes
Language:HTML 3keivan-amini / Node2VecHiC
Node2Vec and PCA on Hi-C matrices for detecting chromosome translocations.
Language:Jupyter Notebook 3pranjalpruthi / CHITRA
A visualization tool for studying chromosomal rearrangements through interactive synteny block analysis and chromosome breakpoint mapping.
Language:TypeScript 3jnarayan81 / ambigram
Evolutionary Chromosome Breakpoints Validator
Language:Perl 2nthomasCUBE / Gexplora
Gexplora - user-interface to analyse genomic elements along chromosomes
Language:Python 2Serg-Norseman / GKGenetix
Simple genetic data analysis for GEDKeeper
Language:C# 2beigecap / tRNA_like_sequences
Research work on the search for tRNA-like sequences in the human genome. National Research Nuclear University MEPhI (Moscow Engineering Physics Institute)
Language:C++ 1christopher-hakkaart / GenomeFiles
Meta-chromosome genome files and scripts
pepprseed / datadraw-examples
collection of examples / demos for python 'datadraw' package, organized as a flask app
Language:Python 1pprattis / Chimeric-Alignment-problem
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
Language:Python 1A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
Language:Python 1A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
Language:Python 1vargasrichards / gmap-modified
An R package to visualize genetic maps.
Language:R 1semboko / RadialProfile
Measures the integral radial density of a fluorescent signal in a nucleus of any shape
Language:Python 0tvmendonca / iRheoCStretch
An app to extract complex viscoelasticity from optical tweezer stretch-strain rheology measurements of chromosomes and other single molecules
Language:MATLAB 0A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
Language:Python- Language:R
