synthetic-biology
There are 145 repositories under synthetic-biology topic.
- Language:Java 822
- polyLanguage:Go 687
Edinburgh-Genome-Foundry / DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Language:Python 608- seqviz
Lattice-Automation / seqviz
a JavaScript DNA, RNA, and protein sequence viewer
Language:TypeScript 255 :pencil2: A versatile DNA sequence optimizer
Language:Python 225- Language:Jupyter Notebook 132
Adibvafa / CodonTransformer
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
Language:Python 112- Language:JavaScript 108
- Cell-DETR
ChristophReich1996 / Cell-DETR
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Language:Python 100 - Language:Java 85
seek4science / seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
Language:Ruby 79TimothyStiles / how-to-synbio
The resources I always recommend to new synthetic biologists.
SynBioHub / synbiohub
Web application enabling users and software to browse, upload, and share synthetic biology designs
Language:JavaScript 74- Language:Java 56
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Language:Python 54brsynth / RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
Language:Python 50🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
Language:Python 41:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
Language:Python 40hiyama341 / teemi
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
Language:Jupyter Notebook 39:space_invader: Generate identicons for DNA sequences with Python
Language:Python 37- Language:Python 35
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Language:Python 33Read DNA sequences from colourful Microsoft Word documents
Language:Python 32A route planner for DNA assembly
Language:Python 31- Language:Go 30
🎨 Python library to plot multi-part genetic constructs
Language:Python 25Amyris / GslCore
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Language:F# 22:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Language:Python 21barricklab / ostir
Software for predicting translation initiation rates in bacteria
Language:Python 20🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Language:Vue 20- TISIGNER-ReactJS
Gardner-BinfLab / TISIGNER-ReactJS
TISIGNER: Unleash the power of synthetic biology
Language:JavaScript 20 🎺 Plot DNA digestion band patterns with Python
Language:Python 19👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
Language:Python 19georgeoshardo / SyMBac
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
Language:Jupyter Notebook 19madewithbio / madewithbio.github.io
Learn how to create with biology.
myjr52 / dynsys.matlab.python
Book Website: Dynamic System Modelling & Analysis with MATLAB & Pythobn
Language:Python 17
