codon

There are 2 repositories under codon topic.

• icor-codon-optimization

  Lattice-Automation / icor-codon-optimization

  RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8

  benchmarkcodoncodon-optimizationdeep-learning
  Language:Python 48
• CodonU

  SouradiptoC / CodonU

  A python project for analysis of codon usage for gene or genome analysis

  bioinformaticsbioinformatics-analysisbioinformatics-toolcodoncodon-biascodon-usagegenomegenome-analysiscodonwcaicbiencrscutai
  Language:Python 16

• waqasuddinkhan / MACARON-GenMed-LabEx

  Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

  macaronsnpclusterpcsnvsnv-annotationsnpcodonannotatorannotation-frameworkvcfsnpeffgatksnvvariantspythongithub
  Language:Python 7

• 0xF6 / Genome

  🧬🦠🧪 [research][wip] Library for working with DNA, RNA, and etc acids

  nucleic-acidsdnarnacodonamino-acidssmilesgenetic
  Language:C# 6

• NHSDigital / codonPython

  The codon project was created to increase code sharing, code consistency, coding standards, and encourage collaboration. Package documentation is available on the GitHub pages. codonPython aims to reduce the barrier for entry for analysis and provide software development experience for those at a higher level of technical ability.

  codonhealthcarenhsnhs-digitalrapreproducible-analytical-pipelinecodonpython
  Language:Python 5

• wbrickner / genonym

  Interspecies protein translator + translation optimizer

  dnadna-sequencesspeciesconversioncodonproteintranslationamino-acidsjavascript-library
  Language:JavaScript 5

• juanvillada / CodG

  Analysis of codon positional dependency

  codon-usagecodongenome
  Language:R 3

• marioroy / mce-sandbox

  Parallel demonstrations for counting and printing prime numbers

  ccodonopenmpperlprimes
  Language:Perl 3

• mutalyzer / backtranslate

  Protein to RNA reverse translation

  amino-acid-sequencebacktranslationsubstitutionsnucleotidestranslationcodonstop-codonamino-acidnucleotide-sequencereverse
  Language:Python 2

• BrenoFariasdaSilva / University

  Here you can find basically most of the exercises I'm solving during my University journey. This repo will contain lots of folders inside of it, each of one related to one subject. It won't be limited to one language.

  cjavacpppythonjupyter-notebookmakefileshellcodeelixiropenglrubyarduinomysqlcodon
  Language:Jupyter Notebook 1

• chaupka / codon_harmonization

  A script for codon harmonization.

  codoncodon-optimizationcodon-usage
  Language:Python 1

• DarkAdin / PythORF

  A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

  genomicsmolecularbiologypythonorfopenreadingframegeneticsdnasequencetargetsnucleotidesproteincodon
  Language:Python 1

• FxllenCode / codont

  overcomplicated biology project spaghetti code written at 3 am ¯\_(ツ)_/¯

  biologycodonjavascriptjsyargsclieducation
  Language:JavaScript 1

• santiagosnchez / CodonAlign

  Generates a codon-based alignment from an amino acid alignment and CDS sequences

  biopythoncodonalignment
  Language:Python 1

• Tenchi2xh / RTOW-Codon

  Implementation of the "Ray Tracing in One Weekend" books using Codon

  codoncomputer-graphicspythonray-tracing
  Language:Python 1

• ct-clmsn / codon_openshmem

  OpenSHMEM bindings for the Codon Python compiler

  codonhpcopenshmempythonsupercomputing
  Language:Makefile 0

• erimerdal / StopReassignDetector

  A Simple Stop Codon Reassignment Detector in Silico

  codonreassignmentsensestopgenetic-algoritm
  Language:MAXScript 0

• helendragon / StretchFinder

  StretchFinder is a tool that helps to analyze the codon composition in genomes. It has the basic pipelines needed in order to draw preliminary conclusions about the codon usage and composition of genomes.

  retrieve-fasta-sequencescodonfastaccds-sequencesuniprot-ids
  Language:HTML 0

• luksaiterugile / reverseTranslate

  Translate peptide sequences into genes using the nucleus genetic code and E. coli codon frequencies.

  codongeneticspeptidestranslation
  Language:Perl 0

• mmferrari / SeqMutationsUtils

  Utility to generate codon mutations of a given coding DNA sequence

  dnadna-sequencesmutationsdna-mutationcodoncodon-mutationdna-processing
  Language:Python 0

• samdarshihawk / Codon-decoder

  Codon decoder, taking a input from user, then the program will display the type protein created by the codon

  genetic-algorithmgenticscodon-usagecodon
  Language:Java 0

• yhs0602 / Codonmaster-ios3

  Memorize triplet codes with a simple game.

  bioinformaticsbiologycodongamegeneticsiosswiftuitriplet
  Language:Swift 0

• ego / awesome-codon

  Awesome codon

  codonpython

• kyu999 / codon_usage_chart

  codoncodon-usagevisualization
  Language:JavaScript