biojulia

There are 1 repository under biojulia topic.

BioJulia / Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
bioinformatics biojulia biojulia-packages biology deprecated dna genomics
Language:Julia 267
BioJulia / BioSequences.jl
Biological sequences for the julia language
biojulia bioinformatics biology biological-sequences
Language:Julia 154
BioJulia / BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biojulia biology julia pdb protein-structure structural-bioinformatics structural-biology
Language:Julia 105
BioJulia / FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
fasta bio biojulia julia parsing file-format fastq fastq-format fastq-files fasta-format fasta-files
Language:Julia 66
BioJulia / BioAlignments.jl
Sequence alignment tools
bam-files sam-files sequence-alignment sequence-analysis dna-sequences biology bioinformatics smith-waterman-alignment high-throughput-sequencing biojulia
Language:Julia 64
BioJulia / BioSymbols.jl
Nucleic and amino acid primitive types
amino-acids bioinformatics biojulia biological-data-analysis biology computational-biology nucleic-acids nucleotides
Language:Julia 30
BioJulia / XAM.jl
Parse and process SAM and BAM formatted files
bioinformatics sam-format bam-format sam bam sam-files bam-files biojulia
Language:Julia 29
BioJulia / KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
biojulia kmer kmer-counting kmer-distribution kmer-frequency-count kmer-composition kmers kmer-spectra
Language:Julia 11
BioJulia / ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
biojulia sequencing files storage format bioinformatics bioinformatics-data biology genomics genomics-data fastq fastq-files fastq-format sam-bam sam-file sam-files bam-files bam-format
Language:Julia 11
BioJulia / BioJuliaRegistry
The BioJulia package registry
julia-packages biojulia biojulia-registry bioinformatics biology
10
BioJulia / SequenceVariation.jl
Biological sequence variation
biology biojulia biological-sequences variant-calling
Language:Julia 8
camilogarciabotero / BioAtomsCount.jl
Count organic atoms in a BioSequence
atoms bioinformatics biojulia organic
Language:Julia 1
camilogarciabotero / BioSimplex.jl
Representing BioSequences as Simplex numerical matrix
bioinformatics biojulia biology julia machine-learning
Language:Julia 1
camilogarciabotero / BioVossEncoder.jl
A small Julia package to represent BioSequences as a Voss matrix
bioinformatics biojulia encoding julia wavelets onehot-encoding onehot-vectors
Language:Julia 1
olgatsiouri1996 / biomisc_julia
collection of miscellaneous command line bioinformatic scripts written in julia for speed
bioinformatics biojulia command-line-tool cross-platform fasta pdb statistics
Language:Julia 1
tmichoel / BioFindr.jl
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia
bioinformatics causal-inference computational-biology gene-network gene-network-inference julia statistical-genetics biojulia gene-expression genomics multi-omics
Language:Julia 1
analytic-garden / BioJulia-and-BioPython
A comparison of Julia and Python on a simple task.
julia python biojulia biopython
Language:Python 0
MillironX / docker-BioJulia
BioJulia in a Docker image
biojulia docker julia
Language:Dockerfile