amino-acids

There are 1 repository under amino-acids topic.

PeptoneLtd / dspp-keras
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
ai amino-acids biology biotechnology database dataset keras machine-learning polymer prediction protein protein-structure tensorflow
Language:Python 166
CSBiology / BioFSharp
Open source bioinformatics and computational biology toolbox written in F#.
bioinformatics biostatistics datascience biology dataprocessing fsharp amino-acids nucleotides sequence-analysis docker bioinformatics-containers biocontainers
Language:F# 105
protlearn
tadorfer / protlearn
A Python package for extracting protein sequence features
amino-acids feature-extraction machine-learning protein python
Language:Python 58
sarisabban / RamaNet
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
protein-structure machine-learning pdb dataset neural-network denovo-design denovo protein-design rmsd topology hpc ab-initio amino-acids
Language:Python 46
debbiemarkslab / EVzoom
Visually explore covariation in protein families
evolution protein-sequences protein-interaction undirected-graphs amino-acids d3js
Language:JavaScript 34
BioJulia / BioSymbols.jl
Nucleic and amino acid primitive types
biology bioinformatics biological-data-analysis computational-biology nucleotides nucleic-acids amino-acids biojulia
Language:Julia 30
gph82 / mdciao
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
molecular-dynamics computational-chemistry structural-biology python pdb-database amino-acids protein-structure gpcr gpcr-numbering kinases
Language:Python 29
WesleyyC / Amino-Acid-Embedding
:microscope: Train an Amino Acid Embeddings (or a dragon?)
amino-acids protein blosum-matrix word-embeddings
Language:MATLAB 17
HussainAther / dnapacman
waka waka
amino-acids pacman dna game protein rna
Language:Python 15
whitehead / plaac
Prion-Like Amino Acid Composition
bioinformatics proteins protein-sequences prion amino-acids prediction-algorithm hidden-markov-model
Language:Java 15
allydunham / aa_subtypes
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
bioinformatics biology research-paper research research-project protein-structure protein mutations protein-sequences amino-acids
Language:R 10
ronak-07 / Divisive-Hierarchical-Clustering
In Divisive we have all points in one cluster initially and we break the cluster into required number of clusters.
divisive-clustering dendrogram hierarchical-clustering amino-acids
Language:Python 10
sarisabban / Pose
A bare metal Python library for building and manipulating protein molecular structures
amino-acids bioinformatics computational-biology denovo denovo-design pdb pose protein-design protein-structure topology biomolecular-simulation biomolecule molecular-simulation molecule protein proteins game-engine numpy python
Language:Python 10
StanIsAdmin / PyProt
A set of libraries for aligning, profiling, and predicting the structure of proteins
protein alignment amino-acids substitutions score-matrix profiling structure-prediction
Language:Python 8
doctorbetaq / SimpleBio.jl
Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.
amino-acids bioinformatics dna rna
Language:Julia 7
0xF6 / Genome
🧬🦠🧪 [research][wip] Library for working with DNA, RNA, and etc acids
amino-acids codon dna genetic nucleic-acids rna smiles
Language:C# 6
richelbilderbeek / AminoAcidFighter
Game in which amino acids do battle, written in C++ using Qt
amino-acids battle cpp cpp14 game qt5 qtcreator sfml sfml-game
Language:C++ 6
Rav4s / DNA_transcription_translation
A simple, fast program which transcribes a DNA strand into messenger RNA (mRNA), which it then translates into amino acids.
dna dna-sequences transcription translation amino-acids rna biology dna-strand dna-transcription-translation messenger-rna translates mrna
Language:Python 5
Rav4s / wasm-dna-transcription-translation
DNA transcription and translation in wasm with rust
acids amino amino-acids biology central-dogma dna javascript rna rust transcription translation wasm webassembly
Language:Rust 5
wbrickner / genonym
Interspecies protein translator + translation optimizer
dna dna-sequences species conversion codon protein translation amino-acids javascript-library
Language:JavaScript 5
apple-phi / thtools
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
amino-acids bioinformatics biology biotechnology python rna toehold-switches
Language:Python 4
ghattab / amino-acids-card-game
An open-source mnemonic card game for amino acids (aa). It essentially relies on a simplified molecular representation, redundant visual encoding, emphasis, and de-emphasis of molecular parts.
amino-acids card-game structure representation chemistry formula information design
4
massie / chipper
Fast proteasomal cleavage detection. Apache-licensed.
amino-acids cleavage peptides
Language:Jupyter Notebook 4
mgfzemor / Pairwise-sequence-Aligment-Tool
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
sequence-alignment pairwise needleman-wunsh smith-waterman needleman-wunsch-algorithm local-alignment global-alignment smith-waterman-alignment proteins amino-acids
Language:HTML 4
gkoulouras / seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
pdb pdb-files ss-txt amino-acids secondary-structure bioinformatics-data bioinformatics-scripts bioinformatics-databases vb-net protein-data-bank protein-sequences protein-secondary-structure bioinformatics
Language:Visual Basic 3
Rav4s / Rust_DNA_transcription_translation
A simple, fast program which transcribes a DNA strand into messenger RNA (mRNA), which it then translates into amino acids, implemented in Rust.
amino amino-acids dna dna-strand messenger-rna mrna rna rust sequences strand transcription translation
Language:Rust 3
zenodeapp / pairwise-alignments
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
algorithm alignment amino-acids dna needleman-wunsch nucleotides proteins smith-waterman substitution-matrices contracts solidity
Language:Solidity 3
forrestbicker / CoarseGrainScripts
A Generalized Algorithm for Coarse-Graining Molecular Dynamics Simulations with Boltzmann parametrization
coarse-grained-beads coarse-grain-mappings amino-acids nucleic-acids computational-biology computational-chemistry
Language:Python 2
jeanmanguy / amino-acids
Suite of Rust crates related to amino acids.
bioinformatics science amino-acids protein peptides
Language:Rust 2
AA-GenomicPrediction
mishaploid / AA-GenomicPrediction
Genomic prediction of amino acid traits in Arabidopsis seeds
amino-acids arabidopsis cookiecutter-data-science genomic-partitioning genomic-prediction snakemake
Language:HTML 2
balazshorvathreal / MegaVir
MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.
amino-acids bacteria eukaryotes metagenomic-pipeline nucleotides virus
Language:R 1
hkabbech / AA_inventory
Inventory of amino acids present on the surface of peripheral proteins of a same family
internship structure pymol dssp hmm rscript amino-acids python3
Language:Python 1
myon-bioinformatics / search_seq_including_spaces
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
python python3 amino-acid-sequence amino-acids bioinformatics insilico nucleotide-sequence nucleotides json csv string-search fasta
Language:Python 1
pritindra / PyPep_Toolbox
A set of tools for different calculation of sequences of peptide, dna, rna, etc.
amino-acids gui biopython peptide overlapping-subsequences
Language:Python 1
derekmichaelwright / AGILE_LDP_Protein
Evaluating the breeding potential of cultivated lentils for protein and amino acid content and quality
amino-acids gwas lentil protein
Language:HTML 0
NutrientInstitute / protein-digestibility
Protein Digestibility Data
amino-acids protein amino-acid-digestibility digestibility protein-digestibility
Language:R

amino-acids

PeptoneLtd / dspp-keras

CSBiology / BioFSharp

tadorfer / protlearn

sarisabban / RamaNet

debbiemarkslab / EVzoom

BioJulia / BioSymbols.jl

gph82 / mdciao

WesleyyC / Amino-Acid-Embedding

HussainAther / dnapacman

whitehead / plaac

allydunham / aa_subtypes

ronak-07 / Divisive-Hierarchical-Clustering

sarisabban / Pose

StanIsAdmin / PyProt

doctorbetaq / SimpleBio.jl

0xF6 / Genome

richelbilderbeek / AminoAcidFighter

Rav4s / DNA_transcription_translation

Rav4s / wasm-dna-transcription-translation

wbrickner / genonym

apple-phi / thtools

ghattab / amino-acids-card-game

massie / chipper

mgfzemor / Pairwise-sequence-Aligment-Tool

gkoulouras / seq-sec-ratio

Rav4s / Rust_DNA_transcription_translation

zenodeapp / pairwise-alignments

forrestbicker / CoarseGrainScripts

jeanmanguy / amino-acids

mishaploid / AA-GenomicPrediction

balazshorvathreal / MegaVir

hkabbech / AA_inventory

myon-bioinformatics / search_seq_including_spaces

pritindra / PyPep_Toolbox

derekmichaelwright / AGILE_LDP_Protein

NutrientInstitute / protein-digestibility