fasta-files
There are 1 repository under fasta-files topic.
- Language:Julia 57
cartoonist / kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
Language:C++ 42raymondkiu / bioinformatics-tools
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Language:Shell 19PNNL-Comp-Mass-Spec / Protein-Digestion-Simulator
Performs validation, transformation, and in-silico digestion of text files containing protein or peptide sequences (FASTA format or delimited text)
Language:C# 4AntoineHo / CircosAlignmentPlotter
Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
Language:Python 3DarisCappelletti / Gff3-tools
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
Language:ASP.NET 3The FASTA File Splitter program can be used to split apart a protein FASTA file into a number of sections. Although the splitting is random, each section will have a nearly identical number of residues.
Language:C# 3- Language:Java 2
angelovangel / fastjac
k-mer similarity metrics for two fastx files
Language:Rust 2DiegoELT / sequenceVisor
A basic TkInter-based interface to visualize DNA sequences from .fasta files, along with base saturation and consensus.
Language:Python 2- pdb2fasta
exTerEX / pdb2fasta
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
Language:C 2 PriyaLakr / NGS_DataAnalysis
Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓
Language:Shell 2- Language:C 1
Parses a FASTA file (with protein name and sequence information) to check for valid text. Also returns protein and residue stats.
Language:C# 1Sarah-Hesham-2022 / BioPython-Getopt-Biological-Command-Line-Interpreter
Bio Python Project using getopt library in python and engaging with the command line prompt.
Language:Python 1bfosso / ITSoneDB-population-pipeline
Scripts used for the population of ITSoneDB
Language:Python 0Marie-Schmit / Java-fasta-gtf-reader
Java project for MSc Applied Bioinformatics at Cranfield University. Java program for gene models visualisation using gene structures from GTF annotation and FASTA files. User can choose a file, display its information, calculate basic statistics, display and highlight exons (with text and graphically).
Language:Java 0abhijeetsingh1704 / CONCAT
Convert sequences in multifasta file to a single sequence with new fasta header
Language:Shell
