SCBIR Lab's repositories
.github
Public profile repo
envs
Conda environment definition files for making environments that are useful for various analysis tasks
monte-barcode
🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.
nf-inspect
🧬🔍 Nextflow pipeline to process demultiplexed Illumina paired-end FASTQ files from INSPECT experiments.
nf-ont-call-variants
Nextflow pipeline to call variants from Nanopore FASTQ files from bacterial clones relative to a wildtype control.
nf-ont-sbrnaseq
Nextflow pipeline to process Nanopore POD5 files from multiple bacterial samples into a gene x cell count table
nf-platereader-screen
Process files from Biotek platereaders, normalise output, perform QC, make plots, and do statistical tests.
ogilo
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
scbirlab.github.io
Lab website
streq
🧬 Python utilities for working with nucleotide sequence strings.
crispio
🌱 Designing CRISPRi experiments in bacteria
nf-sbrnaseq
Nextflow pipeline to process demultiplexed Illumina paired-end FASTQ files from multiple bacterial samples into a gene x cell count table.