sars-cov-2
There are 22 repositories under sars-cov-2 topic.
owid / covid-19-data
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
Language:Python 5640- awesome-coronavirus
soroushchehresa / awesome-coronavirus
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
Language:TypeScript 1552 neherlab / covid19_scenarios
Models of COVID-19 outbreak trajectories and hospital demand
Language:JavaScript 1361- Language:Python 1353
- COVID-Net
lindawangg / COVID-Net
COVID-Net Open Source Initiative
Language:Jupyter Notebook 1148 FoldingAtHome / coronavirus
Folding@home COVID-19 efforts
Language:Python 1095- makair
makers-for-life / makair
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
- seirsplus
ryansmcgee / seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Language:Python 653 GuangchuangYu / nCov2019
query stats of infected coronavirus cases
Language:R 435- graph-theory
je-suis-tm / graph-theory
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS
graph-theorymaximal-cliquesepidemic-modelsir-modeldynamic-systemrandom-graphagent-based-modelingcompartmental-modelcomplex-networkdynamic-networkagent-based-simulationminimum-spanning-treesminimum-spanning-treecomplex-systemsspatial-modelsbianconi-barabasibarabasi-albertsars-cov-2watts-strogatzgraph-coloringLanguage:Jupyter Notebook 330 hodcroftlab / covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Language:Python 315- serratusLanguage:Jupyter Notebook 246
- Open-Source-COVID-19
WeileiZeng / Open-Source-COVID-19
A global collection of Open Source projects during COVID-19
Language:Python 229 nextstrain / nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Language:TypeScript 199CSSEGISandData / COVID-19_Unified-Dataset
Unified COVID-19 Dataset
Language:R 180robert-koch-institut / COVID-19-Impfungen_in_Deutschland
Gemäß Impfverordnung sind alle Impfdaten täglich dem Robert Koch Institut (RKI) zu melden. Die Impfkampagne wurde in ihrem Verlauf um immer weitere Leistungserbringer erweitert, für die mehrere Meldeportale eingerichtet wurden, die in diesem Dokument beschrieben werden.
rajeshrinet / pyross
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python
Language:Jupyter Notebook 164- V-pipeLanguage:Jupyter Notebook 125
kaushikjadhav01 / COVID-19-Detection-Flask-App-based-on-Chest-X-rays-and-CT-Scans
COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.
Language:Jupyter Notebook 123- COVIDNet-CT
haydengunraj / COVIDNet-CT
COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
Language:Jupyter Notebook 119 - usherLanguage:C++ 117
greenelab / covid19-review
A collaborative review of the emerging COVID-19 literature. Join the chat here:
Language:TeX 116Project-Evidence / project-evidence.github.io
Evidence SARS-CoV-2 Emerged From a Biological Laboratory in Wuhan, China
Language:HTML 111OpenGene / fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Language:C++ 109nf-core / viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Language:Nextflow 108Informal summaries of notable SARS-CoV-2 lineages
ailabstw / social-distancing
A simple, decentralized. privacy-reserving contact tracing system
Language:Makefile 88covid19-eu-zh / covid19-eu-data
Automated Data Collection: COVID-19/SARS-COV-2 Cases in EU by Country, State/Province/Local Authorities, and Date
Language:HTML 80Im Datensatz 'COVID-19-Hospitalisierungen' werden die aktuellen Zahlen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - erfassten hospitalisierten COVID-19-Fälle bereitgestellt.
urmi-21 / COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
Language:Python 77Der vorliegende Datansatz enthält umfassende Informationen zu SARS-CoV-2-Infektionen in Deutschland, die gemäß dem Infektionsschutzgesetze (IfSG) von den Gesundheitsämtern an das Robert Koch-Institut (RKI) gemeldet wurden. Die Daten umfassen Informationen zur Anzahl der bestätigten Fälle, Todesfälle und Genesungen.
Das Nowcasting erstellt eine Schätzung des Verlaufs der Anzahl von bereits erfolgten SARS-CoV-2-Erkrankungsfällen in Deutschland unter Berücksichtigung des Diagnose-, Melde- und Übermittlungsverzugs.
- Language:Jupyter Notebook 73
Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.
yijunwang0805 / covid-19
COVID-19 infectious forecasting using SEIR model and R0 estimation
Language:Jupyter Notebook 65- Language:R 63
