There are 15 repositories under molecular topic.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
LAMMPS inputs and data files
This is the repository for the Stmol project, a Streamlit component that uses py3Dmol to render molecules.
Biomolecular Illustration Tool
Code and Data for the paper: Molecular Contrastive Learning with Chemical Element Knowledge Graph [AAAI 2022]
A Consensus Docking Plugin for PyMOL
Official github repository of public UnityMol source code releases -- more details at http://unitymol.sourceforge.net
🥇Samsung AI Challenge 2021 1등 솔루션입니다🥇
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
Command Line Interactive Periodic Table of Elements in multiple languages
Web-first Visualisation platform for Multidimensional Data
3D molecular fingerprints (E3FP) paper repo
An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
Self explained tutorial for molecular dynamics simulation using gromacs
2D molecular dynamics simulation of dust in dusty plasmas
A React component to display molecular formulas
Modeling the synthesis of SILica materials VIA multiscale computer simulation. (implementation in MARTINI forcefield)
Event Driven Molecular Dynamics Simulation
Molecular models of woody biochars at HTT 400C, 600C and 800C; and a collection of experimental property datasets for woody biochars
scripts, commands used for positive selection analysis of Symbiodinium genome and dinoflagellate transcriptomes
Library of PyMOL Python snippets for Google Colab.
Molecular formula parser for Java
This is a tutorial to perform the lennard-jones parameter scaling for rs-remd (repulsive scaling remd) simulations for the amber package.