adomingues

create_r_apckages

collection of links on how to create R packages

createProjectDirectories

Simple script to quickly set-up a VC project.

filterReads

Filter alignments on sequence length and/or identity of first nucleotide.

makeitprettier

A set of ggplot themes and functions to make plots prrrettier

adomingues.github.io

The journey of a bench biologist to the dark arts of bioinformatics

anomaly-detection-resources

Anomaly detection related books, papers, videos, and toolboxes

cleaneRnames

Single function R package to clean the output of base::make.names

ATAC-seq

bioc-refcard

Bioconductor cheat sheet

clipseq

UNDER CONSTRUCTION: CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

derSupplement

enrichR

An R interface to enrichR

forgotten_git

All the git commands I keep googling.

ggpubr

'ggplot2' Based Publication Ready Plots

ggthemes

ggplot themes and scales

ghibli

Studio Ghibli colour palettes for R

JirAgileR

User-friendly :small_blue_diamond:JIRA API wrapper. Track projects & issues from within R

komaletter

Simple yet flexible Letters via the KOMA-Script LaTeX Bundle from R Markdown

littlehelperRs

A package will all those little functions I use make my every day life easier.

md-cv

markdown cv / résumé built with jekyll

pandoc-letter

Pandoc template for writing letters in markdown

readprofiler

[R] Package to characterize aligned reads from BAM files.

redl_domingues_et_al_dev_2020

Deposit of backlisted regions

RIPSeeker

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rweekly.org

R Weekly

scID

scID

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tools

Python package with helper tools for the nf-core community.

workflows-nextflow

Workflow management with Nextflow and nf-core