k-mer-counting
There are 1 repository under k-mer-counting topic.
- Language:C++ 161
- Language:C++ 76
- Language:Nim 39
- Language:Rust 32
suchapalaver / krust
counts k-mers, written in rust
Language:Rust 29pnnl / mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Language:Python 18- Language:C++ 16
MatthewRalston / kmerdb
Python bioinformatics CLI for k-mer counts and de Bruijn graphs
Language:Python 12raw-lab / mercat2
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Language:HTML 10microbial-pangenomes-lab / panfeed
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
Language:Python 8- Language:C++ 6
visheshsinha / DNA-Sequencing
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
Language:Jupyter Notebook 2- Language:Python 1
Scien-ide / Helix
A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.
Language:PHP 1- Language:Shell 0
im-mou / gpu-kmer-counter
Implementación del algoritmo para contar K-mers en una secuencia genética usando GPUs.
Language:C 0pranavkadam / MiniProjects
Assignments in C++
Language:C++ 0jamshed / KmerEstimate_Project
A project submitted as the requirement of the course CSE 549 (Computational Biology), titled as "Efficient Parallelization for KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage". Original serial algorithm available at github.com/srbehera11/KmerEstimate.
Language:C++
