BioJulia

Bio.jl

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Automa.jl

A julia code generator for regular expressions

BioSequences.jl

Biological sequences for the julia language

BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.

BioMakie.jl

Plotting and interface tools for biology.

IntervalTrees.jl

A data structure for efficient manipulation of sets of intervals

PopGen.jl

Population Genetics in Julia

GeneticVariation.jl

Datastructures and algorithms for working with genetic variation

GenomicFeatures.jl

Tools for genomic features in Julia.

BioSymbols.jl

Nucleic and amino acid primitive types

BioTutorials

Tutorial Notebooks of BioJulia

XAM.jl

Parse and process SAM and BAM formatted files

Kmers.jl

In development: Kmer types and methods for julia

SubstitutionModels.jl

Biological Sequence Substitution Models for Julia

Contributing

Documentation, guidelines, and policy on contributing to all BioJulia repositories

GenomicAnnotations.jl

SingleCellProjections.jl

Analysis of Single Cell Expression data in Julia

BGZFStreams.jl

BGZF Stream

BioGenerics.jl

Generic methods, types and modules for the BioJulia ecosystem.

GFF3.jl

KmerAnalysis.jl

K-mer counting algorithms and count-data utilities for the BioJulia framework

FormatSpecimens.jl

Biological file format specimens for testing packages, and functions to assist in testing.

ReadDatastores.jl

Datastores for reads, not your papa's FASTQ files.

WaveletMatrices.jl

The Wavelet Matrix

biojulia.github.io

BioJulia's Website

PopGenCore.jl

Core utilities for PopGen.jl, including the PopData type and file IO

BioJuliaDocs

Indexes.jl

KmerAnalysisMakie.jl

Makie recpies for visualising KmerAnalysis types and results.