R. Burke Squires's repositories
python_biologist
Python Programming for Biologists
jupyter_training
Jupyter and Anaconda Training to NIH personnel
scientific_python_training
scientific python training with pandas, scipy, and scikit-learn
burkesquires.github.io
Blog of R. Burke Squires
every-programmer-should-know
A collection of (mostly) technical things every software developer should know about
Lab_Knowledge_Base
A small collection of useful tutorials and links
Bioinformatics-with-Python-Cookbook-third-edition
Bioinformatics with Python Cookbook, Third Edition
python-scripts
A repository of python scripts that come in handy in automating day-to-day tasks
r-markdown-tutorial
A short tutorial on using R + markdown
becoming_a_reproducible_scientist
Becoming a reproducible scientist (a minimal tutorial)
biopython-notebook
Introduction to BioPython with Jupyter Notebooks
github-slideshow
A robot powered training repository :robot:
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
automation-RR-Jupyter
Automation with Jupyter notebooks
awesome-catholic
A curated list of awesome open-source Catholic projects, libraries and software
CDM
The Common Data Model (CDM) is a standard and extensible collection of schemas (entities, attributes, relationships) that represents business concepts and activities with well-defined semantics, to facilitate data interoperability. Examples of entities include: Account, Contact, Lead, Opportunity, Product, etc.
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
git-for-scientists
git-for-scientists
LeafLIMS
**PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.
magika
Detect file content types with deep learning
rr-jupyter-workshop
Overview of Jupyter RR workshop
sqlite-web
Web-based SQLite database browser written in Python
Tower-Defense-Game
The code from my 12 hour live stream where I created a tower defense game with pygame.