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Scalable long read self-correction and assembly polishing with multiple sequence alignment
Collection of blogs/publications by Nepali devs.
A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py file. A menubox.sh makes it easier to operate and change the webserver settings.
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Study material (pdfs, notes, free course download links etc) for HACKERS
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality
Genome read alignments visualizer
Filter alignments on sequence length and/or identity of first nucleotide.
The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.
a simple in-memory key-value (KV) store as a client-server application running over TCP sockets,
A tool to index and extract data from gzipped FASTQ files
Sanyojan is a highly sensitive, hybrid genome assembler.
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
Temperature, Relative Humidity, Atmospheric Pressure Logger program, displays and saves data to a csv file
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
R functions and workflow for submitting amplicon sequence data to the ENA.
hierarchical clustering of DNA sequence using upcxx
Convert NGS reads to analysis ready variants with GATK's ReadsPipelineSpark
This library content most interesting reads for any mobile developer and another. All book's will be added our member's for you!
A Guide to Automatically Downloading NCBI SRA Reads
GPSeq sequencing data analysis pipeline