There are 24 repositories under cancer topic.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
Training and evaluating a variational autoencoder for pan-cancer gene expression data
A list of web-based interactive biological data visualizations.
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Building classifiers using cancer transcriptomes across 33 different cancer-types
A Slicer extension to provide a GUI around pyradiomics
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
Opensource radiation treatment planning system in Python [AAPM'23]
Provide R access to the NCI Genomic Data Commons portal.
Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
Notebooks for working with The Cancer Imaging Archive datasets
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
It was built a web application as a step forward in building a 3D recommendation system.
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Explore the cancer relevance of your gene list
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app