radiomics

There are 7 repositories under radiomics topic.

AIM-Harvard / pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
radiomics cancer-imaging-research medical-imaging computational-imaging nci-qin tcia-dac python radiomics-features docker nci-itcr radiomics-feature-extraction feature-extraction ibsi
Language:Jupyter Notebook 1069
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
analytics cancer cancer-imaging-research cbica cpp cpp11 cwl cwltool image-analysis itcr machine-learning medical-image-computing medical-image-processing medical-imaging nci nci-itcr nih radiomics radiomics-features u24
Language:C++ 169
AIM-Harvard / SlicerRadiomics
A Slicer extension to provide a GUI around pyradiomics
3d-slicer nciitcr quantitative-imaging nci-itcr radiomics cancer imaging clinical-research
Language:Python 99
JZK00 / Radiomics-Features-Extractor
Hand-crafted radiomics and deep learning-based radiomcis features extraction.
radiomics-feature-extraction medical-image-analysis radiomics
Language:Python 73
rcuocolo / PROSTATEx_masks
Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.
mri radiomics machine-learning
71
kmader / Quantitative-Big-Imaging-2018
(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018
binder-ready big-data image-processing image-analysis lecture-handout mooc-website knime jupyterlab skimage lecture-videos kaggle morphological-analysis radiomics texture-analysis
Language:Jupyter Notebook 52
JZK00 / Radiomics-research-by-using-Python
Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.
radiomics feature-extraction medical-informatics medical-image-analysis
Language:Jupyter Notebook 39
easylearn-fmri / easylearn_dev
Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other biomarker-based disease diagnosis and prediction, treatment response prediction, disease subtyping, dimensional decoding for transdiagnostic psychiatric diseases or other diseases, disease mechanism exploration and etc.
resting-state-fmri machine-learning radiomics deep-learning neuroimaging graphic-user-interface
Language:Python 34
pwoznicki / AutoRadiomics
The easiest tool for experimenting with radiomics features.
medical-image-processing medical-image-computing radiomics
Language:Python 32
oncoray / mirp
Medical Image Radiomics Processor
radiomics image-processing
Language:Python 30
hubertgabrys / DicomToolboxMatlab
Import, visualize, and extract image features from CT and RT Dose DICOM files in MATLAB.
dicom matlab machine-learning image-processing radiotherapy radiomics
Language:MATLAB 29
nadeemlab / CIR
Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]
python cancer-imaging-research clinical-interpretation-algorithm computational-imaging deep-learning feature-extraction interpretability interpretable-deep-learning medical-imaging medical-imaging-datasets radiomics radiomics-feature-extraction radiomics-features pytorch-implementation
Language:Python 24
taznux / radiomics-tools
Image processing tools for radiomics analysis
dicom radiomics radiomics-features nrrd radiomics-analysis feature-extraction ruffus simpleitk python pipeline
Language:C++ 23
EPfaehler / RaCat
radiomics ibsi textural features
Language:C++ 21
zhenweishi / Py-rex
Open source of Pyradiomics extension
cancer-imaging-research medical-imaging pyradiomics python radiation-oncology radiomics
Language:Python 21
radxtools / collageradiomics
Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.
radiomics radiomics-feature-extraction computational-imaging cancer-imaging-research cancer-imaging python docker feature-extraction radiomics-features 3d-slicer-extension itcr
Language:Python 15
dicomtools / TriDFusion
TriDFusion (3DF) Medical Imaging Viewer
dicom dicom-rt dicom-viewer dosimetry machine-learning matlab medical-imaging multimodality radiomics registration segmentation
Language:MATLAB 14
JZK00 / NSCLC_prediction
Radiomics Analysis for Prediction of EGFR Mutations and Ki-67 Proliferation Index in Patients with Non-Small Cell Lung Cancer
radiomics
Language:Jupyter Notebook 13
xiawei999000 / GBM_PCNSL_CNN_modeling
Deep Learning for Automatic Differential Diagnosis of Primary Central Nervous System Lymphoma and Glioblastoma: Multi-parametric MRI based Convolutional Neural Network Model
multi-parametric-mri deep-learning pcnsl gbm cnn radiomics mp-mri brain tumor
Language:R 13
cgplab / RadAR
A tool to perform comprehensive analysis of high-dimensional radiomic datasets
radiomics radiomics-analysis data-analysis imaging imaging-genomics
Language:R 12
JZK00 / BM-GBM
Some accessible radiomics datas were provided in this link.
radiomics cancer-research classification
Language:Python 12
MedPhysUL / delia
DICOM Extraction for Large-scale Image Analysis (DELIA).
dicom hdf5 medical image segmentation formatting python3 medical-imaging database radiomics rt-struct dicom-seg ai deep-learning dataset radiomics-feature-extraction
Language:Python 12
MIMBCD-UI / meta
:paperclip: About MIMBCD-UI Project
medical-imaging multimodality breast-cancer diagnosis human-computer-interaction health-informatics radiomics cancer-research user-interface user-experience usability user-centered-design computer-aided-detection computer-aided-diagnosis
12
anthonyjatoba / deep_radiomics
Deep features and radiomics selection with NSGA-II for pulmonary nodule classification
radiomics feature-selection deep-features genetic-algorithm multi-objective-optimization lung-cancer
Language:Python 11
CFWP / FMradio
Factor Modeling for radiomics
machine-learning factor-analysis radiomics
Language:R 11
szuboy / scikit-radiomics
scikit-radiomics’s documentation!
feature-selection machine-learning python radiomics scikit-radiomics sphinx-doc workflow
Language:Python 11
JZK00 / Ultrasound-Image-Based-Radiomics
Some usable code of ultrasound image-based Radiomics.
radiomics ultrasound-images python
Language:Jupyter Notebook 10
MahdiAll99 / MEDimage
Python Open-source package for medical images processing and radiomics features extraction.
python ibsi medical-image-analysis medical-imaging radiomics radiomics-analysis radiomics-feature-extraction cancer-imaging-research features-extraction radiomic-features radiomics-extraction medimage
Language:Jupyter Notebook 10
fpaupier / cancerous_cells_scans_processing
Predict survival time from PET scans
machine-learning feature-extraction feature-engineering python3 preprocessing medical-imaging medical-image-processing medical-images medical cancer-imaging-research cancer cancer-detection pydicom pyradiomics radiomics radiomics-features
Language:Python 9
andrea-tango / HaraliCU
Haralick feature extraction on medical images exploiting the full dynamics of gray-scale levels
full-dynamic gpu-computing haralick-features medical-imaging radiomics
Language:C++ 7
AryaAftab / tumor-type-classification
Tumor type classification with traditional feature extractions and classifiers.
glcm glrlm nakagami svm tumor-classification gldm knn mlp radiomics
Language:Jupyter Notebook 7
JZK00 / Multimodality_MRI_Radiomics_BM
Multimodality MRI-based radiomics for lung cancer brain metastases analysis
radiomics
Language:Jupyter Notebook 7
lavrovaliz / radiomics-training
a very basic example of Radiomics pipeline
radiomics
Language:Jupyter Notebook 7
SECT
lorinanthony / SECT
Code to Implement the Smooth Euler Characteristic Transform (SECT)
topological-data-analysis radiomics radiomics-features radiomics-feature-extraction shape-analysis gp-regression
Language:R 7
choilab-jefferson / LungCancerScreeningRadiomics
Lung cancer screening radiomics
automl cancer lung radiomics screening mesh spiculation 3d
Language:MATLAB 6
linzhenyuyuchen / ifree
Radoimics Toolkit: Extract from Dicom, Process with Annotation and Select from Radiomic Features
radiomics dicom feature-extraction feature-selection
Language:Python 6

radiomics

AIM-Harvard / pyradiomics

CBICA / CaPTk

AIM-Harvard / SlicerRadiomics

JZK00 / Radiomics-Features-Extractor

rcuocolo / PROSTATEx_masks

kmader / Quantitative-Big-Imaging-2018

JZK00 / Radiomics-research-by-using-Python

easylearn-fmri / easylearn_dev

pwoznicki / AutoRadiomics

oncoray / mirp

hubertgabrys / DicomToolboxMatlab

nadeemlab / CIR

taznux / radiomics-tools

EPfaehler / RaCat

zhenweishi / Py-rex

radxtools / collageradiomics

dicomtools / TriDFusion

JZK00 / NSCLC_prediction

xiawei999000 / GBM_PCNSL_CNN_modeling

cgplab / RadAR

JZK00 / BM-GBM

MedPhysUL / delia

MIMBCD-UI / meta

anthonyjatoba / deep_radiomics

CFWP / FMradio

szuboy / scikit-radiomics

JZK00 / Ultrasound-Image-Based-Radiomics

MahdiAll99 / MEDimage

fpaupier / cancerous_cells_scans_processing

andrea-tango / HaraliCU

AryaAftab / tumor-type-classification

JZK00 / Multimodality_MRI_Radiomics_BM

lavrovaliz / radiomics-training

lorinanthony / SECT

choilab-jefferson / LungCancerScreeningRadiomics

linzhenyuyuchen / ifree