There are 4 repositories under precision-oncology topic.
cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.
Cancer prognosis with shallow tumor RNA sequencing