precision-oncology

There are 4 repositories under precision-oncology topic.

sigven / pcgr
Personal Cancer Genome Reporter (PCGR)
cancer-genomics cancer-variants somatic interpreter reporting-engine clinical oncology-data precision-oncology vcf tumor annotation-framework annotation-tool cancer copy-number-variation snvs therapeutic-targets precision-cancer-medicine variant-interpretation
Language:R 244
pasmopy
pasmopy / pasmopy
Patient-Specific Modeling in Python
systems-biology cancer personalized-medicine kinetic-modeling patient-specific-modeling python computational-biology systems-biology-simulation precision-medicine precision-oncology in-silico-clinical-trial biochemical-networks digital-twin
Language:Python 16
buschlab / MTB-cbioportal
cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.
cbioportal miracum fhir medical-informatics-initiative precision-oncology
Language:Shell 7
pasmopy / breast_cancer
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
cancer breast-cancer breast-cancer-classification patient-specific-modeling tcga ccle breast-cancer-prediction precision-oncology in-silico-clinical-trial systems-biology-simulation digital-twin prognostic-biomarkers stratification
Language:Python 5
buschlab / MIRACUM-Pipe-singularity
MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.
miracum bioinformatics ngs omics-pipeline omics medical-informatics-initiative precision-oncology
Language:R 4
ermshaua / preon
preon (PREcision Oncology Normalization) is a fuzzy search tool for medical entities.
cancer-types data-integration data-normalization drug-name-extraction precision-oncology python research science text-mining
Language:Jupyter Notebook 4
PedroMilanezAlmeida / TumorShallowSeq
Cancer prognosis with shallow tumor RNA sequencing
computational-biology gene-expression machine-learning precision-oncology survival
Language:R 3