medical-image-computing

There are 20 repositories under medical-image-computing topic.

MONAI
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
deep-learning healthcare-imaging medical-image-computing medical-image-processing monai python3 pytorch
Language:Python 5976
torchio
fepegar / torchio
Medical imaging toolkit for deep learning
pytorch medical-image-computing deep-learning data-augmentation medical-images machine-learning python medical-image-processing medical-image-analysis medical-imaging-datasets medical-imaging-with-deep-learning augmentation
Language:Python 2093
Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
medical-imaging vtk itk python qt image-processing national-institutes-of-health medical-image-computing neuroimaging tractography image-guided-therapy registration segmentation 3d-printing nih 3d-slicer tcia-dac kitware c-plus-plus computed-tomography
Language:C++ 1750
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Language:Python 1369
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Language:Python 1313
MedMNIST
MedMNIST / MedMNIST
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
dataset benchmark automl mnist medical medical-image-analysis medmnist multi-modal decathlon medical-imaging medical-image-computing deep-learning machine-learning 3d 2d classification few-shot-learning pytorch federated-learning
Language:Python 1093
Slicer / SlicerGitSVNArchive
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
medical-imaging vtk itk python qt image-processing national-institutes-of-health cross-platform medical-image-computing neuroimaging tractography image-guided-therapy registration segmentation 3d-printing nih 3d-slicer tcia-dac kitware c-plus-plus
Language:C++ 871
MITK / MITK
The Medical Imaging Interaction Toolkit.
mitk medical-imaging medical-image-computing dicom dicom-rt dicom-browser cpp-library
Language:C++ 713
MIC-DKFZ / nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
detection medical medical-imaging medical-image-computing 3d-object-detection pytorch-implementation retina-unet
Language:Python 559
bioinformatics-ua / dicoogle
Dicoogle - Open Source PACS
dicoogle dicom pacs medical-imaging medical-image-computing medical-informatics metadata java dicoogle-platform javascript reactjs nodejs dicom-standard hacktoberfest
Language:Java 450
adalca / neurite
Neural networks toolbox focused on medical image analysis
python keras convolutional-neural-networks brain medical-imaging medical-image-computing tensorflow
Language:Python 342
QIICR / dcmqi
dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
quantitative-imaging dicom imaging-informatics converters cancer-imaging-research medical-image-computing nci-qin tcia-dac nci-itcr 3d-slicer-extension 3d-slicer
Language:C++ 245
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cancer-imaging-research radiomics radiomics-features machine-learning cpp cpp11 u24 itcr nci nci-itcr nih medical-image-processing cancer cbica image-analysis analytics cwl cwltool medical-image-computing medical-imaging
Language:C++ 182
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 155
mkang315 / BGF-YOLO
[MICCAI'24] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".
afpn bi-level-routing-attention biformer bifpn br35h-brain-tumor-detection-2020 cbam ciou-loss computer-vision-algorithms deep-learning-framework deep-neural-networks gfpn giou-loss lesion-detection medical-image-analysis medical-image-computing medical-image-detection medical-image-processing object-detection yolo wiou-loss
Language:Python 95
mkang315 / RCS-YOLO
[MICCAI'23] Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".
brain-tumor-detection computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis object-detection reparameterization yolo br35h-brain-tumor-detection-2020 panet repvgg-model shufflenet vovnet repconv-model medical-image-computing medical-image-dataset medical-image-detection medical-image-processing
Language:Python 80
SlicerDMRI / SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
diffusion-mri 3d-slicer medical-image-computing neuroimaging 3d-slicer-extension tractography
Language:C++ 78
mkang315 / ASF-YOLO
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
breast-cancer-segmentation cell-detection cell-segmentation computer-vision-algorithms data-science-bowl-2018 deep-learning-framework deep-neural-networks detection-segmentation-algorithm hematoxylin-eosin-staining histopathology-image-analysis instance-segmentation lesion-segmentation medical-image-analysis medical-image-computing medical-image-processing medical-image-segmentation nuclei-segmentation nucleus-detection yolo breast-cancer-cell
Language:Python 76
modelhub-ai / modelhub
A collection of deep learning models with a unified API.
deep-learning deep-neural-networks artificial-intelligence artificial-neural-networks medical-imaging medical-image-processing medical-image-computing
Language:Python 69
Slicer / ExtensionsIndex
Slicer extensions index
cross-platform medical-imaging image-processing national-institutes-of-health nih medical-image-computing segmentation registration neuroimaging vtk python qt 3d-slicer 3d-slicer-extension
Language:Python 66
mjpyeon / pytorch-dicom-classification
Code for analyzing medical images saved as .dicom files
dicom dicom-files dicom-images medical-image-computing medical-image-processing medical-informatics mri-data mri-images
Language:Python 60
mkang315 / CST-YOLO
[ICIP'24 Lecture Presentation] Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".
blood-cell-counting-dataset blood-cell-detection blood-cell-detection-dataset complete-bloodcell-count computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-detection medical-image-processing multiscale object-detection shufflenet small-object-detection swin-transformer transformer yolo yolov7
Language:Python 54
JamesQFreeman / simpleITK-Snap
A qt-based 3D data visualization tool.
medical-image-analysis medical-image-computing medical-image-processing
Language:Python 53
KitwareMedical / SlicerCustomAppTemplate
Template to be used as a starting point for creating a custom 3D Slicer application
3d-slicer kitware vtk itk medical-image-computing image-processing python registration segmentation c-plus-plus cross-platform 3d-slicer-custom-application
Language:C++ 51
MIC-DKFZ / RegRCNN
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
3d-detection 3d-mask-rcnn 3d-object-detection deep-learning detection lesion-detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing non-maximum-suppression object-detection pytorch-implementation regression-head retinanet roialign
Language:Python 51
andreasmang / claire
Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)
image-registration medical-image-computing parallel-computing
Language:C++ 47
haarburger / multi-scale-curriculum
Code for Paper: Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
detection retina-unet breast-cancer breast-cancer-classification breast-cancer-detection classification medical-image-computing medical medical-image-analysis pytorch pytorch-implementation miccai miccai-2019 delira
Language:Python 44
L0SG / grouped-ssd-pytorch
PyTorch implementation of Grouped SSD (GSSD) and GSSD++ for focal liver lesion detection from multi-phase CT images (MICCAI 2018, IEEE TETCI 2021)
deep-learning liver-disease liver-disease-prediction medical-diagnostics medical-image-computing medical-images object-detection pytorch single-shot-multibox-detector ssd
Language:Python 44
ericspod / Eidolon
Biomedical Visualization and Analysis Framework
python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk mirtk pyqt4 ogre3d dicom nifti brc 3d-graphics visualization
Language:Python 41
Hsuxu / Paper-Notes
Paper notes in deep learning/machine learning and computer vision
computer-vision deep-learning gan generative-adversarial-network image-caption image-classification image-recognition instance-segmentation machine-learning medical-image-computing object-detection papanoptic-segmentation papers pytorch research semantic-segmentation tensorflow
41
moucheng2017 / EM-BPL-Semi-Seg
[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation
miccai adversarial-attacks expectation-maximization out-of-distribution robustness segmentation semi-supervised-learning bayesian lung brats vessel-segmentation medical-image-computing computer-vision computervision em-algorithm miccai-2022 variational-inference miccai2022
Language:Python 39
pwoznicki / AutoRadiomics
The easiest tool for experimenting with radiomics features.
medical-image-computing medical-image-processing radiomics
Language:Python 37
anjanatiha / Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
deep-learning microscopic-images cancer-detection biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-computing medical-image-analysis medical-application nasnet nasnetmobile nasnet-models keras keras-tensorflow image-classification image-recognition convolutional-neural-network
Language:Jupyter Notebook 28
chestrays / cornerstone_widget
A jupyter widget for the cornerstone library to make showing flashy images with nice tools easier.
jupyter widgets ipywidgets cornerstonejs binder-ready medical-imaging medical-image-computing
Language:Python 26
cimentaur / polyquant
Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.
reconstruction-toolbox ct-reconstruction statistical-inference poisson-reconstruction matlab-toolbox quantitative-imaging image-processing computed-tomography cone-beam-ct cbct medical-imaging medical-image-computing medical-physics scatter
Language:MATLAB 26
QIICR / QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
nciitcr nci-qin quantitative-imaging nci-itcr dicom medical-image-computing 3d-slicer-extension
Language:Python 23