medical-image-computing

There are 20 repositories under medical-image-computing topic.

MONAI
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
deep-learning healthcare-imaging medical-image-computing medical-image-processing monai python3 pytorch
Language:Python 5877
torchio
fepegar / torchio
Medical imaging toolkit for deep learning
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Language:Python 2074
Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk
Language:C++ 1723
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Language:Python 1367
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Language:Python 1306
MedMNIST
MedMNIST / MedMNIST
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
2d 3d automl benchmark classification dataset decathlon deep-learning federated-learning few-shot-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal pytorch
Language:Python 1080
Slicer / SlicerGitSVNArchive
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
3d-printing 3d-slicer c-plus-plus cross-platform image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk
Language:C++ 872
MITK / MITK
The Medical Imaging Interaction Toolkit.
cpp-library dicom dicom-browser dicom-rt medical-image-computing medical-imaging mitk
Language:C++ 704
MIC-DKFZ / nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
3d-object-detection detection medical medical-image-computing medical-imaging pytorch-implementation retina-unet
Language:Python 553
bioinformatics-ua / dicoogle
Dicoogle - Open Source PACS
dicom dicom-standard dicoogle dicoogle-platform hacktoberfest java javascript medical-image-computing medical-imaging medical-informatics metadata nodejs pacs reactjs
Language:Java 450
adalca / neurite
Neural networks toolbox focused on medical image analysis
brain convolutional-neural-networks keras medical-image-computing medical-imaging python tensorflow
Language:Python 340
QIICR / dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
3d-slicer 3d-slicer-extension cancer-imaging-research converters dicom imaging-informatics medical-image-computing nci-itcr nci-qin quantitative-imaging tcia-dac
Language:C++ 238
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cancer-imaging-research radiomics radiomics-features machine-learning cpp cpp11 u24 itcr nci nci-itcr nih medical-image-processing cancer cbica image-analysis analytics cwl cwltool medical-image-computing medical-imaging
Language:C++ 181
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 154
mkang315 / BGF-YOLO
[MICCAI'24] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".
afpn bi-level-routing-attention biformer bifpn br35h-brain-tumor-detection-2020 cbam ciou-loss computer-vision-algorithms deep-learning-framework deep-neural-networks gfpn giou-loss lesion-detection medical-image-analysis medical-image-computing medical-image-detection medical-image-processing object-detection yolo wiou-loss
Language:Python 85
mkang315 / RCS-YOLO
[MICCAI'23] Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".
brain-tumor-detection computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis object-detection reparameterization yolo br35h-brain-tumor-detection-2020 panet repvgg-model shufflenet vovnet repconv-model medical-image-computing medical-image-dataset medical-image-detection medical-image-processing
Language:Python 77
SlicerDMRI / SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
diffusion-mri 3d-slicer medical-image-computing neuroimaging 3d-slicer-extension tractography
Language:C++ 76
modelhub-ai / modelhub
A collection of deep learning models with a unified API.
artificial-intelligence artificial-neural-networks deep-learning deep-neural-networks medical-image-computing medical-image-processing medical-imaging
Language:Python 69
mkang315 / ASF-YOLO
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
breast-cancer-segmentation cell-detection cell-segmentation computer-vision-algorithms data-science-bowl-2018 deep-learning-framework deep-neural-networks detection-segmentation-algorithm hematoxylin-eosin-staining histopathology-image-analysis instance-segmentation lesion-segmentation medical-image-analysis medical-image-computing medical-image-processing medical-image-segmentation nuclei-segmentation nucleus-detection yolo breast-cancer-cell
Language:Python 67
Slicer / ExtensionsIndex
Slicer extensions index
cross-platform medical-imaging image-processing national-institutes-of-health nih medical-image-computing segmentation registration neuroimaging vtk python qt 3d-slicer 3d-slicer-extension
Language:Python 66
mjpyeon / pytorch-dicom-classification
Code for analyzing medical images saved as .dicom files
dicom dicom-files dicom-images mri-images mri-data medical-image-processing medical-image-computing medical-informatics
Language:Python 60
JamesQFreeman / simpleITK-Snap
A qt-based 3D data visualization tool.
medical-image-processing medical-image-analysis medical-image-computing
Language:Python 51
KitwareMedical / SlicerCustomAppTemplate
Template to be used as a starting point for creating a custom 3D Slicer application
3d-slicer 3d-slicer-custom-application c-plus-plus cross-platform image-processing itk kitware medical-image-computing python registration segmentation vtk
Language:C++ 51
MIC-DKFZ / RegRCNN
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
detection object-detection mask-rcnn retinanet 3d-detection 3d-object-detection medical-image-processing medical-image-computing medical-image-analysis deep-learning pytorch-implementation regression-head lesion-detection non-maximum-suppression roialign 3d-mask-rcnn
Language:Python 51
mkang315 / CST-YOLO
[ICIP'24 Lecture Presentation] Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".
blood-cell-detection complete-bloodcell-count computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-processing multiscale object-detection shufflenet small-object-detection swin-transformer transformer yolo yolov7 blood-cell-counting-dataset blood-cell-detection-dataset medical-image-detection
Language:Python 50
andreasmang / claire
Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)
image-registration parallel-computing medical-image-computing
Language:C++ 47
haarburger / multi-scale-curriculum
Code for Paper: Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
breast-cancer breast-cancer-classification breast-cancer-detection classification delira detection medical medical-image-analysis medical-image-computing miccai miccai-2019 pytorch pytorch-implementation retina-unet
Language:Python 44
L0SG / grouped-ssd-pytorch
PyTorch implementation of Grouped SSD (GSSD) and GSSD++ for focal liver lesion detection from multi-phase CT images (MICCAI 2018, IEEE TETCI 2021)
object-detection medical-image-computing single-shot-multibox-detector liver-disease medical-diagnostics deep-learning liver-disease-prediction medical-images pytorch ssd
Language:Python 43
ericspod / Eidolon
Biomedical Visualization and Analysis Framework
python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk mirtk pyqt4 ogre3d dicom nifti brc 3d-graphics visualization
Language:Python 41
Hsuxu / Paper-Notes
Paper notes in deep learning/machine learning and computer vision
computer-vision deep-learning gan generative-adversarial-network image-caption image-classification image-recognition instance-segmentation machine-learning medical-image-computing object-detection papanoptic-segmentation papers pytorch research semantic-segmentation tensorflow
41
moucheng2017 / EM-BPL-Semi-Seg
[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation
adversarial-attacks bayesian brats computer-vision computervision em-algorithm expectation-maximization lung medical-image-computing miccai miccai-2022 miccai2022 out-of-distribution robustness segmentation semi-supervised-learning variational-inference vessel-segmentation
Language:Python 38
pwoznicki / AutoRadiomics
The easiest tool for experimenting with radiomics features.
medical-image-computing medical-image-processing radiomics
Language:Python 37
anjanatiha / Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
deep-learning microscopic-images cancer-detection biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-computing medical-image-analysis medical-application nasnet nasnetmobile nasnet-models keras keras-tensorflow image-classification image-recognition convolutional-neural-network
Language:Jupyter Notebook 28
cimentaur / polyquant
Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.
cbct computed-tomography cone-beam-ct ct-reconstruction image-processing matlab-toolbox medical-image-computing medical-imaging medical-physics poisson-reconstruction quantitative-imaging reconstruction-toolbox scatter statistical-inference
Language:MATLAB 26
chestrays / cornerstone_widget
A jupyter widget for the cornerstone library to make showing flashy images with nice tools easier.
jupyter widgets ipywidgets cornerstonejs binder-ready medical-imaging medical-image-computing
Language:Python 25
QIICR / QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
3d-slicer-extension dicom medical-image-computing nci-itcr nci-qin nciitcr quantitative-imaging
Language:Python 23