medical-image-computing

There are 11 repositories under medical-image-computing topic.

MONAI
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
healthcare-imaging deep-learning medical-image-computing medical-image-processing pytorch python3 monai
Language:Python 3003
torchio
fepegar / torchio
TorchIO: medical imaging for deep learning.
pytorch medical-image-computing deep-learning data-augmentation medical-images machine-learning python medical-image-processing medical-image-analysis medical-imaging-datasets medical-imaging-with-deep-learning augmentation
Language:Python 1380
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
tensorflow distributed ml neural-network python python2 python3 pip deep-neural-networks deep-learning convolutional-neural-networks medical-imaging medical-image-computing medical-image-processing medical-images segmentation gan autoencoder medical-image-analysis image-guided-therapy
Language:Python 1308
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Language:Python 1130
Slicer / SlicerGitSVNArchive
Multi-platform, free open source software for visualization and image computing.
medical-imaging vtk itk python qt image-processing national-institutes-of-health cross-platform medical-image-computing neuroimaging tractography image-guided-therapy registration segmentation 3d-printing nih 3d-slicer tcia-dac kitware c-plus-plus
Language:C++ 893
Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk
Language:C++ 691
MedMNIST
MedMNIST / MedMNIST
18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification: pip install medmnist
dataset benchmark automl mnist medical medical-image-analysis medmnist multi-modal decathlon medical-imaging medical-image-computing deep-learning machine-learning 3d 2d
Language:Python 593
MITK / MITK
The Medical Imaging Interaction Toolkit.
mitk medical-imaging medical-image-computing dicom dicom-rt dicom-browser cpp-library
Language:C++ 481
bioinformatics-ua / dicoogle
Dicoogle - Open Source PACS
dicom dicom-standard dicoogle dicoogle-platform hacktoberfest java javascript medical-image-computing medical-imaging medical-informatics metadata nodejs pacs reactjs
Language:Java 301
MIC-DKFZ / nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
3d-object-detection detection medical medical-image-computing medical-imaging pytorch-implementation retina-unet
Language:Python 293
adalca / neurite
Neural networks toolbox focused on medical image analysis
python keras convolutional-neural-networks brain medical-imaging medical-image-computing tensorflow
Language:Python 255
QIICR / dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source library that can help with the conversion between imaging research formats and the standard DICOM representation for image analysis results
quantitative-imaging dicom imaging-informatics converters cancer-imaging-research medical-image-computing nci-qin tcia-dac nci-itcr 3d-slicer-extension 3d-slicer
Language:C++ 170
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cancer-imaging-research radiomics radiomics-features machine-learning cpp cpp11 u24 itcr nci nci-itcr nih medical-image-processing cancer cbica image-analysis analytics cwl cwltool medical-image-computing medical-imaging
Language:C++ 131
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 84
modelhub-ai / modelhub
A collection of deep learning models with a unified API.
deep-learning deep-neural-networks artificial-intelligence artificial-neural-networks medical-imaging medical-image-processing medical-image-computing
Language:Python 59
SlicerDMRI / SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
diffusion-mri 3d-slicer medical-image-computing neuroimaging 3d-slicer-extension tractography
Language:C++ 49
MIC-DKFZ / RegRCNN
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
3d-detection 3d-mask-rcnn 3d-object-detection deep-learning detection lesion-detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing non-maximum-suppression object-detection pytorch-implementation regression-head retinanet roialign
Language:Python 44
mjpyeon / pytorch-dicom-classification
Code for analyzing medical images saved as .dicom files
dicom dicom-files dicom-images mri-images mri-data medical-image-processing medical-image-computing medical-informatics
Language:Python 44
Slicer / ExtensionsIndex
Slicer extensions index
cross-platform medical-imaging image-processing national-institutes-of-health nih medical-image-computing segmentation registration neuroimaging vtk python qt 3d-slicer 3d-slicer-extension
Language:Python 38
L0SG / grouped-ssd-pytorch
PyTorch implementation of Grouped SSD (GSSD) and GSSD++ for focal liver lesion detection from multi-phase CT images (MICCAI 2018, IEEE TETCI 2021)
deep-learning liver-disease liver-disease-prediction medical-diagnostics medical-image-computing medical-images object-detection pytorch single-shot-multibox-detector ssd
Language:Python 33
haarburger / multi-scale-curriculum
Code for Paper: Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
detection retina-unet breast-cancer breast-cancer-classification breast-cancer-detection classification medical-image-computing medical medical-image-analysis pytorch pytorch-implementation miccai miccai-2019 delira
Language:Python 32
ericspod / Eidolon
Biomedical Visualization and Analysis Framework
python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk mirtk pyqt4 ogre3d dicom nifti brc 3d-graphics visualization
Language:Python 31
andreasmang / claire
Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)
image-registration medical-image-computing parallel-computing
Language:C++ 29
Hsuxu / Paper-Notes
Paper notes in deep learning/machine learning and computer vision
computer-vision deep-learning gan generative-adversarial-network image-caption image-classification image-recognition instance-segmentation machine-learning medical-image-computing object-detection papanoptic-segmentation papers pytorch research semantic-segmentation tensorflow
26
JamesQFreeman / simpleITK-Snap
A qt-based 3D data visualization tool.
medical-image-processing medical-image-analysis medical-image-computing
Language:Python 26
KitwareMedical / SlicerCustomAppTemplate
Template to be used as a starting point for creating a custom 3D Slicer application
3d-slicer kitware vtk itk medical-image-computing image-processing python registration segmentation c-plus-plus cross-platform 3d-slicer-custom-application
Language:C++ 26
chestrays / cornerstone_widget
A jupyter widget for the cornerstone library to make showing flashy images with nice tools easier.
jupyter widgets ipywidgets cornerstonejs binder-ready medical-imaging medical-image-computing
Language:Python 24
anjanatiha / Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
deep-learning microscopic-images cancer-detection biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-computing medical-image-analysis medical-application nasnet nasnetmobile nasnet-models keras keras-tensorflow image-classification image-recognition convolutional-neural-network
Language:Jupyter Notebook 20
gatsby2016 / Fast-WSI-Prediction
Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.
pytorch whole-slide-image classification-task pathological-images deep-learning medical-image-computing
Language:Python 19
QIICR / QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
nciitcr nci-qin quantitative-imaging nci-itcr dicom medical-image-computing 3d-slicer-extension
Language:Python 16
SlicerProstate / SlicerProstate
An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.
3d-slicer medical-image-computing cancer-imaging quantitative-imaging
Language:C++ 15
dvdbisong / automl-medical-image-classification
Google Cloud AutoML Vision for Medical Image Classification
google-automl image-classification medical-image-computing
Language:Jupyter Notebook 13
qiuhuaqi / cardiac-motion
Deep Learning Registration for Cardiac Motion Tracking (STACOM-MICCAI 2019)
cardiac cardiac-motion deep-learning medical-image medical-image-computing medical-image-processing medical-image-registration miccai miccai-2019 pytorch
Language:Python 13
aromanro / NMRI
2D Fourier Transform of Nuclear Magnetic Resonance Imaging raw data
computational-physics physics fft nmri fftw medical-imaging medical-image-computing medical-image-processing mfc
Language:C++ 12
DiffusionMRITool / dmritool
DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).
diffusion-mri itk vtk medical-image-computing cpp sampling reconstruction simulation neuroimaging
Language:C++ 12
cimentaur / polyquant
Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.
reconstruction-toolbox ct-reconstruction statistical-inference poisson-reconstruction matlab-toolbox quantitative-imaging image-processing computed-tomography cone-beam-ct cbct medical-imaging medical-image-computing medical-physics scatter
Language:MATLAB 11

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