There are 1 repository under wsi topic.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Conversion tool/library for converting whole slide images to DICOM
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
A pipeline to segment tissue from the background in histological images
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
Proof of concept whole slide imaging viewer on top of Google Cloud Healthcare DICOM API.
Python scripts for automatic Whole-Slide Image preprocessing.
The code for Kernel attention transformer (KAT)
Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning
PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Implementation).
Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks
a toolbox for manipulation of digital pathology slides and annotations
Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024)
CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022
Toolkit for WSI preprocess, such as resample & zoom, mask, roi selection ect.
Simple prototype of converting whole slide image (WSI) to multiframe DICOM images
A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.
Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"
Suspicious Regions-Based Whole Slide Image Analysis
Rule-Based Thyroid Whole Slide Image Diagnosis
This is a viewer app that provides using to zoom and pan tools Deep Zoom Image (dzi) or Whole Slide Image (wsi) using Electron JS and OpenSeaDragon .
GUI wrapped around anonymise label for SVS and NDPI whole slide images
[CMPB 2024] ProDiv: Prototype-driven consistent pseudo-bag division for whole-slide image classification
The code for LAGE-Net
WSI Clustering Heatmap with ResNet Features