There are 68 repositories under epidemiology topic.
COVID-19 App
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Epidemic Modeling for Everyone
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.
COVID-19 Hospital Impact Model for Epidemics
Unified COVID-19 Dataset
Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
Recognize bio-medical entities from a text corpus
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
An agent-based epidemiology simulation framework built in Rust
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Build Petri net models compositionally
Unpivoted and cleaned data sets on the COVID-19 pandemic
Bayesian spatial analysis
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
Course materials of "Bayesian Modelling and Probabilistic Programming with Numpyro, and Deep Generative Surrogates for Epidemiology"
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
Spatiotemporal datasets collected for network science, deep learning and general machine learning research.
A web platform to detect and analyze variants of SARS-CoV-2
An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
Analysis with Covid-19 data
🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19