heterozygosity

There are 1 repository under heterozygosity topic.

sztup / scarHRD
cancer genomic-scar-scores heterozygosity hrd-loh hrd-score loh telomeric-allelic-imbalances wxs
Language:HTML 102
thierrygosselin / radiator
RADseq Data Exploration, Manipulation and Visualization using R
radseq radseq-data imputation genotype-likelihoods filter genetics missingness outliers genomics genomic-data-analysis genomics-visualization gbs genotyping-by-sequencing visualization outliers-detection heterozygosity paralogs artifacts-detection batch-effects normalization
Language:HTML 57
Gabaldonlab / jloh
A tool to extract LOH blocks from VCF, BAM and FASTA data
heterozygosity bioinformatics genomics
Language:Python 19
tbrunetti / GP3
GWAS Pre-Processing Pipeline
gwas-pipeline gwas quality-metrics quality-assurance quality-control hardy-weinberg-equilibrium heterozygosity linkage-disequilibrium pca 1000genomes minor-allele-frequency identity-by-descent
Language:Python 4
kfarleigh / PopGenHelpR
PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
diversity fst heterozygosity interpolation neis population-genetics population-genomics r snmf structure vcf private-alleles
Language:R 3
AntoineHo / CASH
Compare and shuffle heterozygosity using BED and VCF files
heterozygosity vcf bed contigs comparison assembly defined-regions variants
Language:Python 2
jlescroart / Ramirez2022
Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)
demographic-analysis genome-analysis heterozygosity selection whole-genome-sequencing leopardus
Language:Python 2
jeffersonfparil / poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
pool-seq-data pool-sequencing quantitative-genetics families polyploid population-genetics allele-frequencies bioinformatics evolution genomic-selection gwas heterozygosity site-frequency-spectrum genomic-prediction
Language:Rust 1
endreth / jVCFparser
A command-line parser for VCF files designed for population genetics analyses.
allele-frequencies alleles diversity-analysis diversity-measures genetics genotype heterozygosity homozygosity population-genetics population-genomics vcf vcf-files vcf-format parsing vcfparser
Language:Java 0
hannesgislason / wg-project
Bioinformatic R/Rmd-code for scientific paper published in BMC Genomics
heterozygosity inbreeding relatedness genomes minor-allele-frequency runs-of-homozygosity ancestry bottleneck-effect timing-of-founder-event
Language:R 0
CrazyHsu / heterPlotter
heterPlotter package can plot heterozygosity information of hapmap(female and F1) files and pvalue information you use the same hapmap file to calculate GWAS, besides it can also draw the relative gene feature on the top of the plot
gwas heterozygosity plot
Language:Python