Center for Biomedical Image Computing & Analytics (CBICA)

CBICA

CBICA focuses on the development and application of advanced computation techniques.

Philadelphia, PA

https://www.med.upenn.edu/cbica/

Center for Biomedical Image Computing & Analytics (CBICA)'s repositories

CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

Language:C++NOASSERTION169 5 999

BrainMaGe

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

Language:PythonNOASSERTION30 4 9

HistoReg

Framework for registration of sequential digitized histology slices

Language:ShellNOASSERTION25 6 16

Deep-LIBRA

Language:Python11 5 8

niCHART

The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual

Language:PythonNOASSERTION11 3 91

FigureGenerator

This helps creating high quality figures for use in manuscripts and presentations.

Language:PythonNOASSERTION10 3 4

UK_biobank_pipeline_v_1

Language:ShellNOASSERTION8 4 1

DeepMRSeg

Language:PythonNOASSERTION6 3 32

MRISnapshot

A QC tool for verification of datasets with MRI images and derived masks

Language:PythonMIT4 20

OPM

OpenSlide Patch Manager

Language:PythonBSD-3-Clause4 3 8

NiChart_Project

Neuro Imaging Chart of AI-based Imaging Biomarkers

NOASSERTION200

DeepMRSeg-Models

1 10

GBMSurvival_2023

Language:MATLABNOASSERTION1 40

MICO

Language:C++NOASSERTION1 2 3

NiChart_Tissue_Segmentation

Brain tissue segmentation using FSL FAST and DLICV

Language:PythonNOASSERTION1 10

IPP-API

Image processing portal v2 beta API

Language:Python030

MLSeminarSandbox

Language:Python020

TIP

Translational Imaging Pipelines

Language:PythonNOASSERTION04 2

BrainSegmenter

Language:Shell020

BRIDGEPORT

Source for https://www.cbica.upenn.edu/bridgeport and documentation of the GWAS dataset

Language:JavaScriptNOASSERTION040

cbica.github.io

Language:HTML030

DLICV

A repository that allows users to apply the DLICV method to their brain imaging data.

Language:PythonNOASSERTION010

DLMUSE

A repository that allows users to apply the DLMUSE method to their brain imaging data.

Language:PythonNOASSERTION010

gandlf_experiments_template

Language:PythonApache-2.0000

NiChart_DLMUSE

Language:PythonNOASSERTION000

NiChart_Website

The Landing page for the NiChart project

Language:JavaScriptNOASSERTION000

qt

UNCHANGED distribution of Qt_5.10.1 to satisfy license requirement

LGPL-3.0020

RESPOND

Language:Shell000

SOPNMF

SOPNMF is the fast python implementation of stochastic orthogonally projective non-negative matrix factorization

Language:PythonMIT000

spare_score

Compute SPARE scores to detect characteristic feature patterns

Language:PythonNOASSERTION002