Center for Biomedical Image Computing & Analytics (CBICA)

CBICA

CBICA focuses on the development and application of advanced computation techniques.

Philadelphia, PA

https://www.med.upenn.edu/cbica/

Center for Biomedical Image Computing & Analytics (CBICA)'s repositories

CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

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BrainMaGe

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

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NiChart_Project

Neuro Imaging Chart of AI-based Imaging Biomarkers

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niCHART

The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual

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Deep-LIBRA

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FigureGenerator

This helps creating high quality figures for use in manuscripts and presentations.

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DeepMRSeg

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MRISnapshot

A QC tool for verification of datasets with MRI images and derived masks

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DLMUSE

A repository that allows users to apply the DLMUSE method to their brain imaging data.

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NiChart_DLMUSE

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GBMSurvival_2023

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NiChart_Tissue_Segmentation

Brain tissue segmentation using FSL FAST and DLICV

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spare_score

Compute SPARE scores to detect characteristic feature patterns

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DeepMRSeg-Models

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DLICV

A repository that allows users to apply the DLICV method to their brain imaging data.

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NiChart_Harmonize

Statistical harmonization package in NiChart

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NiChart_Viewer

Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers

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NiChart_Website

The Landing page for the NiChart project

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NiChart_Workflows

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TIP

Translational Imaging Pipelines

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BrainSegmenter

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BRIDGEPORT

Source for https://www.cbica.upenn.edu/bridgeport and documentation of the GWAS dataset

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cbica.github.io

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DLWMLS

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gandlf_experiments_template

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GBM_Survival_ReSPOND_2024

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PredCRD

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RESPOND

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slurm_billing_report

Prints out usage and charge for given Slurm account and time period.

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SurrealGAN

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