protein-complexes

There are 1 repository under protein-complexes topic.

debbiemarkslab / EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
structure-prediction 3d-structure protein protein-complexes
Language:Jupyter Notebook 219
af2complex
FreshAirTonight / af2complex
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
bioinformatics deep-learning alphafold2 protein-complexes protein-protein-interaction protein-structure-prediction protein-protein-docking
Language:Python 141
sigven / oncoEnrichR
Cancer-dedicated gene set interpretation
cancer high-throughput-screening tcga-data report-generator protein-protein-interaction co-expression disease-gene-association crispr-target proteins genesets prioritization protein-complexes cancer-survival functional-enrichment-analysis tissue-enrichment-analysis pathway-enrichment-analysis cancer-hallmark-evidence
Language:R 48
kliment-olechnovic / ftdmp
FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.
bioinformatics protein-complexes protein-structure
Language:C++ 8
nkurzaw / Rtpca
R package for performing (differential) thermal co-aggregation analysis with TPP datasets
r-package tpp protein-protein protein-complexes
Language:R 3
marcottelab / super.complex_website_humap
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM
community-detection protein-complexes protein-complex-identification supervised-machine-learning protein-protein-interaction-network protein-protein-interactions
Language:HTML 2
wasineer-dev / braid
Predict protein complexes from high-throughput data
clustering python proteins markov-random-field protein-complexes protein-protein-interaction
Language:Python 2
marcottelab / RL_complex_detection
Reinforcement learning community detection method using known communities
community-detection community-detection-algorithm protein-complexes protein-protein-interaction-network reinforcement-learning
Language:Python 1
bio2bel / complexportal
Nomenclature and definitions of protein complexes in BEL
biological-expression-language terminology protein-complexes proteins
Language:Python
bio2bel / famplex
Convert FamPlex to BEL
biological-expression-language protein-families protein-complexes terminology ontology
Language:Python
marcottelab / RL_humap_prediction
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL
community-detection protein-complex-identification protein-complexes protein-protein-interaction-network protein-protein-interactions reinforcement-learning
Language:HTML
SlavovLab / nPOP
Code for the research article "Exploring functional protein covariation across single cells using nPOP". It is distributed under MIT license.
gene-regulation protein-complexes proteomics regulation sample-preparation single-cell-ananlysis single-cell-proteomics
Language:R