medical-image-processing

There are 88 repositories under medical-image-processing topic.

MONAI
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
healthcare-imaging deep-learning medical-image-computing medical-image-processing pytorch python3 monai
Language:Python 5282
Viewers
OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
cancer-imaging-research dicom dicom-viewer hacktoberfest image-analysis imaging-informatics javascript medical medical-image-processing medical-imaging nci-itcr nci-qin quantitative-imaging reactjs
Language:TypeScript 2896
torchio
fepegar / torchio
Medical imaging toolkit for deep learning
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Language:Python 1954
MedicalZooPytorch
black0017 / MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
segmentation deep-learning pytorch medical-imaging medical-image-processing medical-image-segmentation 3d-convolutional-network brats2019 brats2018 densenet resnet iseg-challenge iseg mrbrains18 unet unet-image-segmentation segmentation-models
Language:Python 1610
DLTK / DLTK
Deep Learning Toolkit for Medical Image Analysis
deep-learning machine-learning neural-networks tensorflow medical-imaging data-science ml deep-neural-networks python medical dltk dltk-model-zoo neural-network neuroimaging cnn medical-image-processing
Language:Python 1421
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
tensorflow distributed ml neural-network python python2 python3 pip deep-neural-networks deep-learning convolutional-neural-networks medical-imaging medical-image-computing medical-image-processing medical-images segmentation gan autoencoder medical-image-analysis image-guided-therapy
Language:Python 1356
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Language:Python 1266
ANTsX / ANTs
Advanced Normalization Tools (ANTs)
image-registration image-segmentation medical-image-processing neuroimaging
Language:C++ 1119
torchxrayvision
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
medical-imaging medical-ai deep-learning machine-learning transfer-learning dataset image-classification medical-image-processing medical-application medical medical-image-analysis chest-xray chest-radiographs cxr cxr-images chest-xray-images pytorch torchxrayvision foundation-models
Language:Jupyter Notebook 829
MontaEllis / Pytorch-Medical-Segmentation
This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.
pytorch torchio segmentation medical-image-processing
Language:Python 811
rezazad68 / BCDU-Net
BCDU-Net : Medical Image Segmentation
lstm unet-keras abcdu-net segmentation medical-image-processing medical-image-segmentation lung-segmentation skin-lesion-segmentation retinal-vessel-segmentation deep-learning convolutional-autoencoder convolutional-neural-networks medical medical-application cancer-detection semantic semantic-segmentation bcdu-net unet keras
Language:Python 674
JoHof / lungmask
Automated lung segmentation in CT
lung-segmentation chest-ct medical-imaging medical-image-processing lung-lobes medical-image-analysis lung-disease covid-19 covid-19-ct
Language:Python 610
junyuchen245 / Transformer_for_medical_image_analysis
A collection of papers about Transformer in the field of medical image analysis.
medical-image-analysis medical-image-processing pytorch tensorflow transformer vision-transformer
451
rishikksh20 / ResUnet
Pytorch implementation of ResUnet and ResUnet ++
resunet unet image-processing image-segmentation unet-pytorch medical-image-processing satellite-imagery deep-residual-network segmentation image-to-image-translation
Language:Python 411
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 393
assassint2017 / MICCAI-LITS2017
liver segmentation using deep learning
pytorch liver-segmentation deep-learning medical-image-processing fully-convolutional-networks
Language:Python 378
DigitalSlideArchive / HistomicsTK
A Python toolkit for pathology image analysis algorithms.
computer-vision medical-image-processing machine-learning bioimage-informatics histology python digital-slide-archive
Language:Python 365
3d-mri-brain-tumor-segmentation-using-autoencoder-regularization
IAmSuyogJadhav / 3d-mri-brain-tumor-segmentation-using-autoencoder-regularization
Keras implementation of the paper "3D MRI brain tumor segmentation using autoencoder regularization" by Myronenko A. (https://arxiv.org/abs/1810.11654).
brats2018 cnn keras deep-learning medical-image-processing
Language:Jupyter Notebook 358
Mycenae / PaperWeekly
Papers for CNN, object detection, keypoint detection, semantic segmentation, medical image processing, SLAM, etc.
convolutional-neural-networks face-recognition keypoint-detection medical-image-processing object-detection semantic-segmentation slam transformers
246
DmitryRyumin / CVPR-2023-Papers
CVPR 2023 Papers: Dive into advanced research presented at the leading computer vision conference. Keep up to date with the latest developments in computer vision and deep learning. Code included. ⭐ support visual intelligence development!
action-recognition autonomous-driving biometrics computer-vision cvpr cvpr2023 datasets deep-learning face-recognition gesture-recognition image-synthesis medical-image-processing multi-modal-learning pattern-recognition robotics scene-analysis segmentation self-supervised-learning shape-analysis video-synthesis
Language:Python 244
amanchadha / coursera-ai-for-medicine-specialization
Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai
coursera deeplearning deeplearning-ai andrew-ng andrew-ng-course convolutional-neural-networks convolutional-neural-network cnn image-processing image-classification segmentation diagnosis prognosis medical-imaging medical medical-image-processing image-recognition image-segmentation image-manipulation ai-for-medicine
Language:Jupyter Notebook 231
NITR098 / Awesome-U-Net
Official repo for Medical Image Segmentation Review: The success of U-Net
medical-image-processing medical-image-segmentation segmentation-models transformer u-net unet-image-segmentation unet-pytorch
Language:Jupyter Notebook 219
Ainimal / Aini_Medic
A simple-to-use yet function-rich medical image processing toolbox
2d 3d medical-image-processing toolbox visualization
Language:Python 200
natandrade / Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-registration medical-imaging medical-image-processing medical-image-analysis tutorial-medical-image-registration
Language:Jupyter Notebook 198
hsokooti / RegNet
Nonrigid image registration using multi-scale 3D convolutional neural networks
convolutional-neural-networks image-registration machine-learning medical-image-processing tensorflow
Language:Python 189
BubblyYi / Coronary-Artery-Tracking-via-3D-CNN-Classification
The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classiﬁer')
3d-cnn 3d-classification pytorch coronary-artery centerline-extraction 3d-cnn-tracker centerline medical-image-processing deep-learning blood-vessel vessel centerline-detection
Language:Python 175
fangq / iso2mesh
Iso2Mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave
matlab image-processing visualization modeling-tools medical-image-processing computer-graphics mesh-generation
Language:MATLAB 175
GavriloviciEduard / Asclepios-DICOM-Viewer
Bachelor thesis project. A DICOM Viewer written in C++, QT and VTK.
dicom-viewer vtk bachelor-thesis cpp17 cpp dicom medical-imaging medical-image-processing medical qt5 qt 2d 3d radiology nuclear-medicine dcmtk viewer
Language:C++ 175
rt-utils
qurit / rt-utils
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
dicom rtstruct mask roi pydicom ai medical-imaging medical-image-processing nuclear-medicine typed rt-structs binary-masks rt-utils
Language:Python 175
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cancer-imaging-research radiomics radiomics-features machine-learning cpp cpp11 u24 itcr nci nci-itcr nih medical-image-processing cancer cbica image-analysis analytics cwl cwltool medical-image-computing medical-imaging
Language:C++ 169
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-networks convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging mri neural-networks neuroimage neuroimaging theano
Language:Python 161
fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
medical-imaging pre-processing 3d-preproceing normalization resampling python simpleitk registration 3d-padding crop medical-image-processing medical-image-analysis 3d abdomen-ct ct-preprocessing mri-preprocessing
Language:Jupyter Notebook 159
liaohaofu / adn
ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction
artifact-removal disentangled-representations medical-imaging medical-image-processing deep-learning deep-neural-networks image-enhancement metal-artifact deblurring deraining dehazing adn
Language:Python 159
minerva-ml / open-solution-data-science-bowl-2018
Open solution to the Data Science Bowl 2018
data-science machine-learning deep-learning kaggle data-science-bowl python image-processing segmentation python3 data-science-bowl-2018 open-source medical-imaging medical-image-processing neptune unet unet-image-segmentation unet-pytorch
Language:Python 158
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks densenet fcn hyperdensenet image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation multi-modal-imaging neural-networks segment-medical-images segmentation theano
Language:Python 147
kaapana / kaapana
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
ai cloud-computing imaging kubernetes medical-image-processing medical-imaging platform
Language:Python 143