medical-image-processing

There are 71 repositories under medical-image-processing topic.

MONAI
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
healthcare-imaging deep-learning medical-image-computing medical-image-processing pytorch python3 monai
Language:Python 3001
Viewers
OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
cancer-imaging-research dicom hacktoberfest image-analysis imaging-informatics javascript medical-image-processing medical-imaging nci-itcr nci-qin quantitative-imaging reactjs
Language:JavaScript 1912
torchio
fepegar / torchio
TorchIO: medical imaging for deep learning.
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Language:Python 1376
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Language:Python 1308
DLTK / DLTK
Deep Learning Toolkit for Medical Image Analysis
cnn data-science deep-learning deep-neural-networks dltk dltk-model-zoo machine-learning medical medical-image-processing medical-imaging ml neural-network neural-networks neuroimaging python tensorflow
Language:Python 1307
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
detection retina-unet object-detection mask-rcnn 3d-models deep-learning retina-net deep-neural-networks segmentation semantic-segmentation u-net 3d-mask-rcnn 3d-object-detection medical-imaging medical-image-processing medical-image-computing medical-image-analysis pytorch-deeplearning pytorch-cnn pytorch-implementation
Language:Python 1130
MedicalZooPytorch
black0017 / MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
segmentation deep-learning pytorch medical-imaging medical-image-processing medical-image-segmentation 3d-convolutional-network brats2019 brats2018 densenet resnet iseg-challenge iseg mrbrains18 unet unet-image-segmentation segmentation-models
Language:Python 1001
MontaEllis / Pytorch-Medical-Segmentation
This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.
medical-image-processing pytorch segmentation torchio
Language:Python 524
torchxrayvision
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models.
medical-imaging medical-ai deep-learning machine-learning transfer-learning dataset image-classification medical-image-processing medical-application medical medical-image-analysis chest-xray chest-radiographs cxr cxr-images chestxray14 chest-xray-images pytorch
Language:Jupyter Notebook 482
rezazad68 / BCDU-Net
BCDU-Net : Medical Image Segmentation
lstm unet-keras abcdu-net segmentation medical-image-processing medical-image-segmentation lung-segmentation skin-lesion-segmentation retinal-vessel-segmentation deep-learning convolutional-autoencoder convolutional-neural-networks medical medical-application cancer-detection semantic semantic-segmentation bcdu-net unet keras
Language:Python 467
JoHof / lungmask
Automated lung segmentation in CT
chest-ct covid-19 covid-19-ct lung-disease lung-lobes lung-segmentation medical-image-analysis medical-image-processing medical-imaging
Language:Python 397
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 309
junyuchen245 / Transformer_for_medical_image_analysis
A collection of papers about Transformer in the field of medical image analysis.
transformer medical-image-processing tensorflow medical-image-analysis vision-transformer pytorch
304
3d-mri-brain-tumor-segmentation-using-autoencoder-regularization
IAmSuyogJadhav / 3d-mri-brain-tumor-segmentation-using-autoencoder-regularization
Keras implementation of the paper "3D MRI brain tumor segmentation using autoencoder regularization" by Myronenko A. (https://arxiv.org/abs/1810.11654).
brats2018 cnn deep-learning keras medical-image-processing
Language:Jupyter Notebook 297
assassint2017 / MICCAI-LITS2017
liver segmentation using deep learning
deep-learning fully-convolutional-networks liver-segmentation medical-image-processing pytorch
Language:Python 277
DigitalSlideArchive / HistomicsTK
A Python toolkit for pathology image analysis algorithms.
computer-vision medical-image-processing machine-learning bioimage-informatics histology python digital-slide-archive
Language:Python 244
rishikksh20 / ResUnet
Pytorch implementation of ResUnet and ResUnet ++
resunet unet image-processing image-segmentation unet-pytorch medical-image-processing satellite-imagery deep-residual-network segmentation image-to-image-translation
Language:Python 201
hsokooti / RegNet
Nonrigid image registration using multi-scale 3D convolutional neural networks
image-registration convolutional-neural-networks machine-learning medical-image-processing tensorflow
Language:Python 169
Mycenae / PaperWeekly
Papers for CNN, object detection, keypoint detection, semantic segmentation, medical image processing, SLAM, etc.
convolutional-neural-networks face-recognition keypoint-detection medical-image-processing object-detection semantic-segmentation slam transformers
166
minerva-ml / open-solution-data-science-bowl-2018
Open solution to the Data Science Bowl 2018
data-science machine-learning deep-learning kaggle data-science-bowl python image-processing segmentation python3 data-science-bowl-2018 open-source medical-imaging medical-image-processing neptune unet unet-image-segmentation unet-pytorch
Language:Python 159
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-networks convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging mri neural-networks neuroimage neuroimaging theano
Language:Python 155
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks densenet fcn hyperdensenet image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation multi-modal-imaging neural-networks segment-medical-images segmentation theano
Language:Python 138
natandrade / Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-registration medical-imaging medical-image-processing medical-image-analysis tutorial-medical-image-registration
Language:Jupyter Notebook 138
CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
analytics cancer cancer-imaging-research cbica cpp cpp11 cwl cwltool image-analysis itcr machine-learning medical-image-computing medical-image-processing medical-imaging nci nci-itcr nih radiomics radiomics-features u24
Language:C++ 131
fangq / iso2mesh
Iso2Mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave
matlab image-processing visualization modeling-tools medical-image-processing computer-graphics mesh-generation
Language:MATLAB 125
ardamavi / 3D-Medical-Segmentation-GAN
3D Liver Segmentation with GAN
artificial-intelligence deep-learning medical-image-processing
Language:Python 115
DLTK / models
DLTK Model Zoo
dltk dltk-model-zoo deep-learning deep-neural-networks medical medical-imaging medical-image-processing models machine-learning data-science cnn pre-trained
Language:Jupyter Notebook 112
liaohaofu / adn
ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction
adn artifact-removal deblurring deep-learning deep-neural-networks dehazing deraining disentangled-representations image-enhancement medical-image-processing medical-imaging metal-artifact
Language:Python 111
BubblyYi / Coronary-Artery-Tracking-via-3D-CNN-Classification
The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classiﬁer')
3d-classification 3d-cnn 3d-cnn-tracker blood-vessel centerline centerline-detection centerline-extraction coronary-artery deep-learning medical-image-processing pytorch vessel
Language:Python 110
getsanjeev / retina-features
Project for segmentation of blood vessels, microaneurysm and hardexudates in fundus images.
blood-vessels clustering diabetic-retinopathy exudates fundus hardexudates-detection image-processing medical-image-processing microaneurysm morphological-analysis opencv python retina retina-image-analysis retinal-images segmentation
Language:Python 110
reactmed / neurdicom
RESTful PACS server with plugins
dicom pacs django tensorflow plugin-system medical-imaging medical-image-processing tornado mri-images dicomweb
Language:Python 103
amanchadha / coursera-ai-for-medicine-specialization
Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai
coursera deeplearning deeplearning-ai andrew-ng andrew-ng-course convolutional-neural-networks convolutional-neural-network cnn image-processing image-classification segmentation diagnosis prognosis medical-imaging medical medical-image-processing image-recognition image-segmentation image-manipulation ai-for-medicine
Language:Jupyter Notebook 89
obendidi / X-ray-classification
X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2
classification x-ray medical-image-processing medical-imaging x-ray-images tensorflow vgg chest-xray-images deep-learning deep-neural-networks image-processing inception-resnet
Language:Python 87
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 84
frankkramer-lab / covid19.MIScnn
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
covid-19 medical-image-analysis covid-19-ct segmentation pneumonia lung-disease infection 3d-unet lung-segmentation medical-imaging lung-lobes computer-vision u-net healthcare-imaging deep-learning tensorflow medical-image-processing
Language:Python 75
kaapana / kaapana
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
imaging ai cloud-computing medical-imaging medical-image-processing platform kubernetes
Language:Python 74

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