quantitative-imaging

There are 1 repository under quantitative-imaging topic.

• Viewers

  OHIF / Viewers

  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

  nci-itcrnci-qinquantitative-imagingimaging-informaticscancer-imaging-researchdicomimage-analysismedical-image-processingmedical-imagingreactjsjavascripthacktoberfestdicom-viewermedical
  Language:TypeScript 2898

• QIICR / dcmqi

  dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

  quantitative-imagingdicomimaging-informaticsconverterscancer-imaging-researchmedical-image-computingnci-qintcia-dacnci-itcr3d-slicer-extension3d-slicer
  Language:C++ 222

• AIM-Harvard / SlicerRadiomics

  A Slicer extension to provide a GUI around pyradiomics

  3d-slicernciitcrquantitative-imagingnci-itcrradiomicscancerimagingclinical-research
  Language:Python 99
• PyTomography

  qurit / PyTomography

  This repository enables easy and fast medical image reconstruction in Python.

  image-reconstructionmedical-imagingspectnuclear-medicinepythonpytorchquantitative-imaging
  Language:Python 73

• wdika / mridc

  Data Consistency Toolbox for Magnetic Resonance Imaging

  deep-learningpytorchmachine-learningmrimri-reconstructionrecurrent-inference-machinesvariational-networkunetconvolutional-neural-networksdata-consistencymedical-imagingmedical-image-processingmedical-image-analysisfastmricompressed-sensingcirimquantitative-image-analysisquantitative-imagingquantitative-mri
  Language:Jupyter Notebook 37

• OHIF / VTKPlugin

  OHIF Plugin for The Visualization Toolkit (VTK)

  image-analysisimaging-informaticsmedical-image-processingnci-itcrnci-qinohif-pluginquantitative-imaging
  Language:JavaScript 35

• cimentaur / polyquant

  Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.

  reconstruction-toolboxct-reconstructionstatistical-inferencepoisson-reconstructionmatlab-toolboxquantitative-imagingimage-processingcomputed-tomographycone-beam-ctcbctmedical-imagingmedical-image-computingmedical-physicsscatter
  Language:MATLAB 26

• QIICR / QuantitativeReporting

  Segmentation-based measurements with DICOM import and export of the results.

  nciitcrnci-qinquantitative-imagingnci-itcrdicommedical-image-computing3d-slicer-extension
  Language:Python 21

• SlicerProstate / SlicerProstate

  An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.

  3d-slicermedical-image-computingcancer-imagingquantitative-imaging
  Language:C++ 16

• DanuserLab / cmeAnalysis

  clathrin-mediated endocytosis analysis

  cell-biologybioinformaticsquantitative-imagingmicroscopy
  Language:MATLAB 8

• DanuserLab / u-inferforce

  u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.

  cell-biologytraction-force-microscopymatlabbioinformaticsquantitative-imaging
  Language:MATLAB 7
• u-probe

  DanuserLab / u-probe

  Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

  biosensorbioinformaticsquantitative-imagingcell-biologyratiometric-biosensors
  Language:MATLAB 6
• Windowing-Protrusion

  DanuserLab / Windowing-Protrusion

  Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

  bioinformaticscell-biologymicroscopyquantitative-imagingsegmentation
  Language:MATLAB 4

• QIICR / dcmqi-guide

  Learning materials for https://github.com/qiicr/dcmqi

  dicomquantitative-imagingconvertersimaging-informaticsmedical-image-computing
  Language:JavaScript 3

• amatov / SegmentionCellEdge

  cell-segmentationprostate-cancermetastasis-analysisactive-contourpixel-intensity-thresholdingcell-cell-junctionfocal-adhesioncomputer-visionimage-analysis-and-processingquantitative-imagingtotal-internal-reflection-fluorescence-microscopyoncogenic-signaling-pathways-regulationintegrin-adhesion-complexescell-migrationmulti-parametric-analysisbayesian-network-inferencesmall-gtpase-rap1metastasis-promoting-hormone-hgffocal-adhesion-motion-trackingfocal-adhesion-morphology-analysis
  Language:MATLAB 1

• OHIF / OpenLayersPlugin

  Example OHIF plugin based using OpenLayers

  image-analysisimaging-informaticsmedical-image-processingnci-itcrohif-pluginquantitative-imaging
  Language:JavaScript 1

• crad / infrastructure

  This is the home for deployment scripts used to setup the Radiomics platform. This site was published at data.radiomics.io and maintained by @Kitware.

  cancerradiomicsquantitative-imagingcancer-imaging-researchclinical-researchfeature-extractionradiomics-feature-extractionmedical-imaging3d-slicer
  Language:Python 0

• olivier-bernard-creatis / olivier-bernard-creatis.github.io

  Website of Olivier Bernard, Professor at the university of Lyon (INSA) and Deputy Director of the CREATIS research laboratory

  artificial-intelligencefoundation-modelsheterogenous-datamedical-imagingquantitative-imagingsimulation-modeling
  Language:JavaScript 0

• SlicerProstate / SlicerPIRADS

  3D Slicer extension for supporting PI-RADS v2 reading

  assessmentpi-radsquantitative-imagingslicer
  Language:Python 0

• DanuserLab / QFSM

  Quantitative Fluorescent Speckle Microscopy

  bioinformaticscell-biologyquantitative-imaging
  Language:MATLAB