Mark Keller's repositories
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
use-coordination
Implement coordinated multiple views in React-based visualization systems.
anyhtmlwidget
Bringing core concepts from anywidget to R
esbuild-py
Python bindings to the esbuild Transform API
anndataR
AnnData interoperability in R
anywidget
custom jupyter widgets made easy
anywidget-lite
Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡
arrow
Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing
crul
R6 based http client for R (for developers)
d3-contour
Compute contour polygons using marching squares.
docs
The open-source repo for docs.github.com
duckdb-wasm
WebAssembly version of DuckDB
geotiff.js
geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
hd-vis-scripts
Download the full Semantic Scholar academic graph, then insert into an SQL database
jetblack-duckdb-react
Utilities for using DuckDB in react
mosaic
An extensible framework for linking databases and interactive views.
pyLemur
A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
pyodide
Pyodide is a Python distribution for the browser and Node.js based on WebAssembly
pySankey
This is the maintened version of PySankey (pySankeyBeta on Pypi)
scanpy
Single-cell analysis in Python. Scales to >1M cells.
Spatial-Query
Spatial query for spatial transcriptomics data
stdlib
The Observable standard library.
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
zarrita.js
A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays