There are 13 repositories under cwl topic.
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Common Workflow Language reference implementation
Python package to extend Airflow functionality with CWL1.1 support
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
The WES API is a standard way to run and manage portable workflows.
CWL CommandLineTool descriptions for biology/life-sciences related applications
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Python library for RO-Crate
A web application to view and share Common Workflow Language workflows
The CWL v1.0 - v1.2 user guide
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
APIs for discovering genomics tools, their metadata and their containers
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
[Experimental] Workflow Definition Language (WDL) to CWL
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.