medical-image-analysis

There are 35 repositories under medical-image-analysis topic.

torchio
fepegar / torchio
Medical imaging toolkit for deep learning
pytorch medical-image-computing deep-learning data-augmentation medical-images machine-learning python medical-image-processing medical-image-analysis medical-imaging-datasets medical-imaging-with-deep-learning augmentation
Language:Python 1954
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
tensorflow distributed ml neural-network python python2 python3 pip deep-neural-networks deep-learning convolutional-neural-networks medical-imaging medical-image-computing medical-image-processing medical-images segmentation gan autoencoder medical-image-analysis image-guided-therapy
Language:Python 1356
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
detection retina-unet object-detection mask-rcnn 3d-models deep-learning retina-net deep-neural-networks segmentation semantic-segmentation u-net 3d-mask-rcnn 3d-object-detection medical-imaging medical-image-processing medical-image-computing medical-image-analysis pytorch-deeplearning pytorch-cnn pytorch-implementation
Language:Python 1266
awesome-transformers-in-medical-imaging
fahadshamshad / awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
transformers vision-transformers medical-imaging medical-image-analysis clinical-report medical-report-generate deep-neural-networks medical-image-segmentation medical-image-classification medical-image-detection medical-image-reconstruction medical-image-synthesis medical-image-registration covid-19 awesome-list brats2021 brain-tumor-segmentation
1097
MedMNIST
MedMNIST / MedMNIST
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
2d 3d automl benchmark classification dataset decathlon deep-learning federated-learning few-shot-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal pytorch
Language:Python 970
suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
dicom dicom-images golang golang-library golang-package parser medical medical-imaging pacs streaming real-time imaging dicom-files medical-image-analysis dcm go
Language:Go 895
torchxrayvision
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
medical-imaging medical-ai deep-learning machine-learning transfer-learning dataset image-classification medical-image-processing medical-application medical medical-image-analysis chest-xray chest-radiographs cxr cxr-images chest-xray-images pytorch torchxrayvision foundation-models
Language:Jupyter Notebook 829
nyukat / breast_cancer_classifier
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
breast-cancer breast-cancer-diagnosis classification deep-learning medical-image-analysis medical-imaging neural-network pretrained-models pytorch tensorflow
Language:Jupyter Notebook 824
jeya-maria-jose / Medical-Transformer
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
pytorch segmentation medical-imaging medical-image-analysis deep-learning transformers attention transformer
Language:Python 772
JoHof / lungmask
Automated lung segmentation in CT
lung-segmentation chest-ct medical-imaging medical-image-processing lung-lobes medical-image-analysis lung-disease covid-19 covid-19-ct
Language:Python 610
Ainimal / Aini_Modules
A PyTorch Computer Vision (CV) module library for building n-D networks flexibly ~
image medical-image-analysis pretrained-models pytorch video 3d-cnn-model 3d-densenet 3d-models 3d-resnet attention-mechanism transformer 3d-vgg
Language:Python 501
BMIRDS / deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
cancer histopathology-images lung medical-image-analysis microscopy pathology-image resnet sliding-windows wsi
Language:Python 473
junyuchen245 / Transformer_for_medical_image_analysis
A collection of papers about Transformer in the field of medical image analysis.
transformer medical-image-processing tensorflow medical-image-analysis vision-transformer pytorch
452
pykale
pykale / pykale
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!
machine-learning knowledge-aware-learning computer-vision graph-analysis pytorch medical-image-analysis multimodal-learning transfer-learning domain-adaptation data-science deep-learning meta-learning python multimodal
Language:Python 427
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 393
arnab39 / FewShot_GAN-Unet3D
Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning
few-shot-learning brain-mri semi-supervised-learning unet-3d unet-tensorflow gans semi-supervised-gan multi-modal-imaging medical-image-analysis iseg-challenge weightnorm-3d 3d-gan image-segmentation tensorflow convolutional-neural-networks
Language:Python 368
HzFu / COVID19_imaging_AI_paper_list
COVID-19 imaging-based AI paper collection
covid-19 medical-image-analysis paper-list
330
TissueImageAnalytics / tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
python computational-pathology whole-slide-imaging deep-learning digital-pathology histopathology image-analysis machine-learning tissue-analysis tissue-segmentation cell-classification cell-segmentation medical-image-analysis stain-normalization
Language:Python 317
HUANGLIZI / LViT
[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
medical-image-analysis pytorch segmentation vision-language multimodal-learning
Language:Python 247
MIC-DKFZ / MedNeXt
MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).
convnext medical-image-analysis medical-image-segmentation medical-imaging transformers unet-image-segmentation mednext
Language:Python 236
natandrade / Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-registration medical-imaging medical-image-processing medical-image-analysis tutorial-medical-image-registration
Language:Jupyter Notebook 198
perslev / MultiPlanarUNet
Multi-Planar UNet for autonomous segmentation of 3D medical images
python deep-learning medical-image-analysis fully-convolutional-network
Language:Python 188
DeepBrainSeg
koriavinash1 / DeepBrainSeg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
biomedical-image-analysis deep-learning brats ensemble-learning deep-convolutional-neural-networks brain-tumor-segmentation segmentation artificial-intelligence medical-image-analysis brain-segmentation brain-tumor
Language:Python 180
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 161
fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
medical-imaging pre-processing 3d-preproceing normalization resampling python simpleitk registration 3d-padding crop medical-image-processing medical-image-analysis 3d abdomen-ct ct-preprocessing mri-preprocessing
Language:Jupyter Notebook 159
facebookresearch / CovidPrognosis
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
medical-imaging deep-learning radiography x-ray pytorch covid-19 medical-image-analysis
Language:Python 157
GewelsJI / VPS
Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"
video-polyp-segmentation video-object-segmentation awesome-polyp-segmentation polyp-segmentation colonoscopy medical-image-segmentation medical-image-analysis pytorch deep-learning jittor
Language:Python 156
M3DV / ACSConv
[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!
acs-convolution 3d-convolution 3d-images medical-image-analysis
Language:Python 155
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
cnn fcn 3d-cnn convolutional-neural-networks hyperdensenet medical-image-processing segmentation image-segmentation deep-learning deep-neural-networks theano segment-medical-images 3d-convolutional-network deep-learning-algorithms brain-segmentation multi-modal-imaging densenet neural-networks medical-image-analysis medical-image-segmentation
Language:Python 148
GaNDLF
mlcommons / GaNDLF
A generalizable application framework for segmentation, regression, and classification using PyTorch
biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation
Language:Python 138
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 135
shawnyuen / gans_paper_collection
deep-learning generative-adversarial-network tensorflow tensorlayer keras pytorch torch theano gans cgans medical-imaging medical-image-analysis
134
mazurowski-lab / segment-anything-medical-evaluation
Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis
medical-image-analysis medical-imaging segment-anything segment-anything-model segmentation
Language:Python 124
RichardObi / medigan
medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis
medical generation gans toolbox python deep-learning machine-learning computer-vision dataset endoscopy generative-adversarial-network generative-ai generative-model medical-image-analysis medical-image-dataset medical-imaging radiology synthesis synthetic-data magnetic-resonance-imaging
Language:Python 108
Kaushalya / medclip
A multi-modal CLIP model trained on the medical dataset ROCO
transformers jax flax huggingface machine-learning medical-image-analysis
Language:Jupyter Notebook 106
RL4M / PCRLv2
An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
ct-scans medical-image-analysis mri self-supervised-learning x-ray
Language:Python 105

medical-image-analysis

fepegar / torchio

NifTK / NiftyNet

MIC-DKFZ / medicaldetectiontoolkit

fahadshamshad / awesome-transformers-in-medical-imaging

MedMNIST / MedMNIST

suyashkumar / dicom

mlmed / torchxrayvision

nyukat / breast_cancer_classifier

jeya-maria-jose / Medical-Transformer

JoHof / lungmask

Ainimal / Aini_Modules

BMIRDS / deepslide

junyuchen245 / Transformer_for_medical_image_analysis

pykale / pykale

frankkramer-lab / MIScnn

arnab39 / FewShot_GAN-Unet3D

HzFu / COVID19_imaging_AI_paper_list

TissueImageAnalytics / tiatoolbox

HUANGLIZI / LViT

MIC-DKFZ / MedNeXt

natandrade / Tutorial-Medical-Image-Registration

perslev / MultiPlanarUNet

koriavinash1 / DeepBrainSeg

josedolz / LiviaNET

fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need

facebookresearch / CovidPrognosis

GewelsJI / VPS

M3DV / ACSConv

josedolz / HyperDenseNet

mlcommons / GaNDLF

anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

shawnyuen / gans_paper_collection

mazurowski-lab / segment-anything-medical-evaluation

RichardObi / medigan

Kaushalya / medclip

RL4M / PCRLv2