medical-image-analysis

There are 36 repositories under medical-image-analysis topic.

torchio
fepegar / torchio
Medical imaging toolkit for deep learning
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Language:Python 2076
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
tensorflow distributed ml neural-network python python2 python3 pip deep-neural-networks deep-learning convolutional-neural-networks medical-imaging medical-image-computing medical-image-processing medical-images segmentation gan autoencoder medical-image-analysis image-guided-therapy
Language:Python 1368
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Language:Python 1306
awesome-transformers-in-medical-imaging
fahadshamshad / awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
awesome-list brain-tumor-segmentation brats2021 clinical-report covid-19 deep-neural-networks medical-image-analysis medical-image-classification medical-image-detection medical-image-reconstruction medical-image-registration medical-image-segmentation medical-image-synthesis medical-imaging medical-report-generate transformers vision-transformers
1196
MedMNIST
MedMNIST / MedMNIST
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
2d 3d automl benchmark classification dataset decathlon deep-learning federated-learning few-shot-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal pytorch
Language:Python 1082
suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
dicom dicom-images golang golang-library golang-package parser medical medical-imaging pacs streaming real-time imaging dicom-files medical-image-analysis dcm go
Language:Go 951
torchxrayvision
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
chest-radiographs chest-xray chest-xray-images cxr cxr-images dataset deep-learning foundation-models image-classification machine-learning medical medical-ai medical-application medical-image-analysis medical-image-processing medical-imaging pytorch torchxrayvision transfer-learning
Language:Jupyter Notebook 932
nyukat / breast_cancer_classifier
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
breast-cancer breast-cancer-diagnosis classification deep-learning medical-image-analysis medical-imaging neural-network pretrained-models pytorch tensorflow
Language:Jupyter Notebook 847
jeya-maria-jose / Medical-Transformer
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
pytorch segmentation medical-imaging medical-image-analysis deep-learning transformers attention transformer
Language:Python 807
JoHof / lungmask
Automated lung segmentation in CT
chest-ct covid-19 covid-19-ct lung-disease lung-lobes lung-segmentation medical-image-analysis medical-image-processing medical-imaging
Language:Python 666
WAMAWAMA / WAMA_Modules
A PyTorch Computer Vision (CV) module library for building n-D networks flexibly ~
3d-cnn-model 3d-densenet 3d-models 3d-resnet 3d-vgg attention-mechanism image medical-image-analysis pretrained-models pytorch transformer video
Language:Python 504
BMIRDS / deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
histopathology-images microscopy sliding-windows medical-image-analysis resnet wsi lung cancer pathology-image
Language:Python 491
junyuchen245 / Transformer_for_medical_image_analysis
A collection of papers about Transformer in the field of medical image analysis.
medical-image-analysis medical-image-processing pytorch tensorflow transformer vision-transformer
466
pykale
pykale / pykale
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!
machine-learning knowledge-aware-learning computer-vision graph-analysis pytorch medical-image-analysis multimodal-learning transfer-learning domain-adaptation data-science deep-learning meta-learning python multimodal
Language:Python 442
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 406
TissueImageAnalytics / tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
python computational-pathology whole-slide-imaging deep-learning digital-pathology histopathology image-analysis machine-learning tissue-analysis tissue-segmentation cell-classification cell-segmentation medical-image-analysis stain-normalization
Language:Python 385
arnab39 / FewShot_GAN-Unet3D
Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning
3d-gan brain-mri convolutional-neural-networks few-shot-learning gans image-segmentation iseg-challenge medical-image-analysis multi-modal-imaging semi-supervised-gan semi-supervised-learning tensorflow unet-3d unet-tensorflow weightnorm-3d
Language:Python 379
MIC-DKFZ / MedNeXt
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
convnext ct-segmentation medical-ai medical-image-analysis medical-image-segmentation medical-imaging mednext mri-segmentation transformers unet-image-segmentation
Language:Python 345
HzFu / COVID19_imaging_AI_paper_list
COVID-19 imaging-based AI paper collection
covid-19 medical-image-analysis paper-list
330
HUANGLIZI / LViT
[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
medical-image-analysis multimodal-learning pytorch segmentation vision-language
Language:Python 304
xmindflow / Awesome-Foundation-Models-in-Medical-Imaging
A curated list of foundation models for vision and language tasks in medical imaging
foundation-models medical medical-image-analysis medical-image-processing medical-imaging sam
212
natandrade / Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-registration medical-imaging medical-image-processing medical-image-analysis tutorial-medical-image-registration
Language:Jupyter Notebook 210
xmindflow / Awesome_Mamba
Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis
computer-vision deep-learning gnn image-enhancement large-language-models llm mamba mamba-state-space-models medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging natural-language-processing remote-sensing speech-processing state-space-model survey time-series
197
fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
medical-imaging pre-processing 3d-preproceing normalization resampling python simpleitk registration 3d-padding crop medical-image-processing medical-image-analysis 3d abdomen-ct ct-preprocessing mri-preprocessing
Language:Jupyter Notebook 190
perslev / MultiPlanarUNet
Multi-Planar UNet for autonomous segmentation of 3D medical images
python deep-learning medical-image-analysis fully-convolutional-network
Language:Python 189
DeepBrainSeg
koriavinash1 / DeepBrainSeg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
artificial-intelligence biomedical-image-analysis brain-segmentation brain-tumor brain-tumor-segmentation brats deep-convolutional-neural-networks deep-learning ensemble-learning medical-image-analysis segmentation
Language:Python 185
GewelsJI / VPS
Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"
awesome-polyp-segmentation colonoscopy deep-learning jittor medical-image-analysis medical-image-segmentation polyp-segmentation pytorch video-object-segmentation video-polyp-segmentation
Language:Python 177
M3DV / ACSConv
[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!
acs-convolution 3d-convolution 3d-images medical-image-analysis
Language:Python 169
GaNDLF
mlcommons / GaNDLF
A generalizable application framework for segmentation, regression, and classification using PyTorch
biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation
Language:Python 165
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano mri neural-networks neuroimage neuroimaging deep-learning-algorithms deep-neural-networks brain-segmentation medical-image-segmentation medical-image-analysis
Language:Python 161
facebookresearch / CovidPrognosis
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
medical-imaging deep-learning radiography x-ray pytorch covid-19 medical-image-analysis
Language:Python 157
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 154
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
cnn fcn 3d-cnn convolutional-neural-networks hyperdensenet medical-image-processing segmentation image-segmentation deep-learning deep-neural-networks theano segment-medical-images 3d-convolutional-network deep-learning-algorithms brain-segmentation multi-modal-imaging densenet neural-networks medical-image-analysis medical-image-segmentation
Language:Python 149
edaaydinea / AI-Projects-for-Healthcare
This repository is included artificial intelligence, machine learning, data science, computer vision projects related to healthcare.
deep-learning artificial-intelligence medical-imaging medical-image-analysis medicine-classification healthcare
Language:Jupyter Notebook 146
Luffy03 / VoCo
[CVPR 2024] VoCo: A Simple-yet-Effective Volume Contrastive Learning Framework for 3D Medical Image Analysis
medical-image-analysis medical-image-segmentation self-supervised-learning
Language:Python 146
mazurowski-lab / segment-anything-medical-evaluation
Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis
medical-image-analysis medical-imaging segment-anything segment-anything-model segmentation
Language:Python 146

medical-image-analysis

fepegar / torchio

NifTK / NiftyNet

MIC-DKFZ / medicaldetectiontoolkit

fahadshamshad / awesome-transformers-in-medical-imaging

MedMNIST / MedMNIST

suyashkumar / dicom

mlmed / torchxrayvision

nyukat / breast_cancer_classifier

jeya-maria-jose / Medical-Transformer

JoHof / lungmask

WAMAWAMA / WAMA_Modules

BMIRDS / deepslide

junyuchen245 / Transformer_for_medical_image_analysis

pykale / pykale

frankkramer-lab / MIScnn

TissueImageAnalytics / tiatoolbox

arnab39 / FewShot_GAN-Unet3D

MIC-DKFZ / MedNeXt

HzFu / COVID19_imaging_AI_paper_list

HUANGLIZI / LViT

xmindflow / Awesome-Foundation-Models-in-Medical-Imaging

natandrade / Tutorial-Medical-Image-Registration

xmindflow / Awesome_Mamba

fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need

perslev / MultiPlanarUNet

koriavinash1 / DeepBrainSeg

GewelsJI / VPS

M3DV / ACSConv

mlcommons / GaNDLF

josedolz / LiviaNET

facebookresearch / CovidPrognosis

anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

josedolz / HyperDenseNet

edaaydinea / AI-Projects-for-Healthcare

Luffy03 / VoCo

mazurowski-lab / segment-anything-medical-evaluation