medical-image-analysis

There are 24 repositories under medical-image-analysis topic.

torchio
fepegar / torchio
TorchIO: medical imaging for deep learning.
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Language:Python 1376
NifTK / NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Language:Python 1308
MIC-DKFZ / medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
detection retina-unet object-detection mask-rcnn 3d-models deep-learning retina-net deep-neural-networks segmentation semantic-segmentation u-net 3d-mask-rcnn 3d-object-detection medical-imaging medical-image-processing medical-image-computing medical-image-analysis pytorch-deeplearning pytorch-cnn pytorch-implementation
Language:Python 1130
suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
dicom dicom-files dicom-images golang golang-library golang-package imaging medical medical-image-analysis medical-imaging pacs parser real-time streaming
Language:Go 737
nyukat / breast_cancer_classifier
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
pytorch breast-cancer classification pretrained-models deep-learning neural-network breast-cancer-diagnosis medical-imaging medical-image-analysis tensorflow
Language:Jupyter Notebook 721
MedMNIST
MedMNIST / MedMNIST
18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification: pip install medmnist
2d 3d automl benchmark dataset decathlon deep-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal
Language:Python 593
jeya-maria-jose / Medical-Transformer
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
pytorch segmentation medical-imaging medical-image-analysis deep-learning transformers attention transformer
Language:Python 524
torchxrayvision
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models.
medical-imaging medical-ai deep-learning machine-learning transfer-learning dataset image-classification medical-image-processing medical-application medical medical-image-analysis chest-xray chest-radiographs cxr cxr-images chestxray14 chest-xray-images pytorch
Language:Jupyter Notebook 482
awesome-transformers-in-medical-imaging
fahadshamshad / awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
transformers vision-transformers medical-imaging medical-image-analysis clinical-report medical-report-generate deep-neural-networks medical-image-segmentation medical-image-classification medical-image-detection medical-image-reconstruction medical-image-synthesis medical-image-registration covid-19 awesome-list brats2021 brain-tumor-segmentation
411
JoHof / lungmask
Automated lung segmentation in CT
chest-ct covid-19 covid-19-ct lung-disease lung-lobes lung-segmentation medical-image-analysis medical-image-processing medical-imaging
Language:Python 397
BMIRDS / deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
histopathology-images microscopy sliding-windows medical-image-analysis resnet wsi lung cancer pathology-image
Language:Python 379
pykale
pykale / pykale
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem
computer-vision domain-adaptation graph-analysis knowledge-aware-learning machine-learning medical-image-analysis multimodal-learning pytorch transfer-learning
Language:Python 337
arnab39 / FewShot_GAN-Unet3D
Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning
3d-gan brain-mri convolutional-neural-networks few-shot-learning gans image-segmentation iseg-challenge medical-image-analysis multi-modal-imaging semi-supervised-gan semi-supervised-learning tensorflow unet-3d unet-tensorflow weightnorm-3d
Language:Python 322
HzFu / COVID19_imaging_AI_paper_list
COVID-19 imaging-based AI paper collection
covid-19 medical-image-analysis paper-list
319
frankkramer-lab / MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging segmentation neural-network pip healthcare-imaging
Language:Python 309
junyuchen245 / Transformer_for_medical_image_analysis
A collection of papers about Transformer in the field of medical image analysis.
transformer medical-image-processing tensorflow medical-image-analysis vision-transformer pytorch
304
perslev / MultiPlanarUNet
Multi-Planar UNet for autonomous segmentation of 3D medical images
deep-learning fully-convolutional-network medical-image-analysis python
Language:Python 159
josedolz / LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-networks convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging mri neural-networks neuroimage neuroimaging theano
Language:Python 155
facebookresearch / CovidPrognosis
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
medical-imaging deep-learning radiography x-ray pytorch covid-19 medical-image-analysis
Language:Python 145
josedolz / HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
3d-cnn 3d-convolutional-network brain-segmentation cnn convolutional-neural-networks deep-learning deep-learning-algorithms deep-neural-networks densenet fcn hyperdensenet image-segmentation medical-image-analysis medical-image-processing medical-image-segmentation multi-modal-imaging neural-networks segment-medical-images segmentation theano
Language:Python 138
natandrade / Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-registration medical-imaging medical-image-processing medical-image-analysis tutorial-medical-image-registration
Language:Jupyter Notebook 138
DeepBrainSeg
koriavinash1 / DeepBrainSeg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
biomedical-image-analysis deep-learning brats ensemble-learning deep-convolutional-neural-networks brain-tumor-segmentation segmentation artificial-intelligence medical-image-analysis brain-segmentation brain-tumor
Language:Python 131
shawnyuen / GANsPaperCollection
cgans deep-learning gans generative-adversarial-network keras medical-image-analysis medical-imaging pytorch tensorflow tensorlayer theano torch
129
M3DV / ACSConv
[IEEE JBHI] Reinventing 2D Convolutions for 3D Images
3d-convolution 3d-images acs-convolution medical-image-analysis
Language:Python 85
anjanatiha / Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
image-recognition image-detection convolutional-neural-networks keras keras-tensorflow tensorflow inception inceptionv3 imagenet deep-convolutional-networks pneumonia-detection chest-xray-images biomedical-image-processing biomedical-image-analysis biomedical-applications medical-imaging medical-image-processing medical-image-analysis medical-image-computing medical-application
Language:Jupyter Notebook 84
frankkramer-lab / covid19.MIScnn
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
covid-19 medical-image-analysis covid-19-ct segmentation pneumonia lung-disease infection 3d-unet lung-segmentation medical-imaging lung-lobes computer-vision u-net healthcare-imaging deep-learning tensorflow medical-image-processing
Language:Python 75
BMIRDS / HistoGAN
Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.
artificial-intelligence cyclegan data-science gan machine-learning medical-image-analysis medical-imaging
Language:Python 70
wulalago / DAF3D
Deep Attentive Features for Prostate Segmentation in 3D Transrectal Ultrasound
prostate-segmentation medical-image-analysis attention-mechanism pytorch-implementation
Language:Python 59
fitushar / 3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk
Language:Jupyter Notebook 56
pymia
rundherum / pymia
pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis
dataloader deep-learning machine-learning medical-image-analysis metrics python-library
Language:Python 50
SharifAmit / RVGAN
[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network
keras tensorflow retinal-vessel-segmentation vessel-segmentation gan generative-adversarial-network generative-adversarial-networks conditional-gan medical-imaging medical-image-analysis medical-image-segmentation retinal-diseases fundus fundus-image-analysis miccai
Language:Python 50
ZzzjzzZ / ETNet
ET-Net: A Generic Edge-aTtention Guidance Network for Medical Image Segmentation
medical-image-analysis semantic-segmentation
46
MIC-DKFZ / RegRCNN
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
detection object-detection mask-rcnn retinanet 3d-detection 3d-object-detection medical-image-processing medical-image-computing medical-image-analysis deep-learning pytorch-implementation regression-head lesion-detection non-maximum-suppression roialign 3d-mask-rcnn
Language:Python 44
haranrk / DigiPathAI
Digital Pathology AI
cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi
Language:JavaScript 43
GewelsJI / VPS
Video Polyp Segmentation (VPS)
awesome-list awesome-polyp-segmentation colonoscopy deep-learning medical-image-analysis medical-image-segmentation polyp-segmentation pytorch video-object-segmentation video-polyp-segmentation
Language:Python 38
ad12 / DOSMA
An AI-powered open-source medical image analysis toolbox
mri deep-learning musculoskeletal medical-image-analysis
Language:Python 37

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